Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0948
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.47 
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    25   7.7  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    25   7.7  

>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -2

Query: 371 RVTSESALVQLHMSLVNESQLQSSSWQTVTVLLCAREVFNTKIICHHVVQRMLNSS--RH 198
           ++ S+S L  L    + E+       ++  V  C R +  +K +CH  +   ++ +   +
Sbjct: 4   KIRSQSVLNTLETFFIKENHYDMQREESSIVNACLRYLGYSKSMCHEKMPIFMDIAFIEY 63

Query: 197 HFNHALPPTSFRS 159
            FN +L P+SF++
Sbjct: 64  CFNLSLDPSSFQN 76


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +1

Query: 484 NIEIRNVQHVIINERAL---AWLPFPRENEMNPGLRITIDNSTIDEIASHAIQGRFN 645
           NI+  +V H II    L   AWL    +   +P  R ++++  + EIA      R N
Sbjct: 181 NIQPLSVPHEIITSYGLVNDAWLSVYPDQVEHPPNRFSMNDKELVEIAGTTCDSRLN 237


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 303 ILLADGYRVALCQGGV 256
           +   DGYR  +CQGG+
Sbjct: 187 VFYEDGYRALICQGGL 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,144
Number of Sequences: 5004
Number of extensions: 56084
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)