Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0948
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    31   0.77 
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    31   0.77 
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    28   7.1  
L15201-5|AAA27943.2|  219|Caenorhabditis elegans Egg laying defe...    28   7.1  

>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
 Frame = +1

Query: 301 DDCSCDSFTRLICNC--TSADSEVTLRPDGPYRVPSTITAIFINGCGRISF--LSDTVRD 468
           D C  DS     C+C  T+ D         P  +P   T + ++G   IS   L+  +  
Sbjct: 477 DSCFIDSICPTQCDCYGTTVDCNKRGLNTIPTSIPRFATQLLLSG-NNISTVDLNSNIHV 535

Query: 469 LINLRNIEIRNVQHVIINERALAWLPFPRENEMNPGLRITIDNSTIDE 612
           L NL  +++ N     IN+++   L   RE  +N        +  +DE
Sbjct: 536 LENLEVLDLSNNHITFINDKSFEKLSKLRELRLNDNKLHHFSSMVLDE 583


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
 Frame = +1

Query: 301 DDCSCDSFTRLICNC--TSADSEVTLRPDGPYRVPSTITAIFINGCGRISF--LSDTVRD 468
           D C  DS     C+C  T+ D         P  +P   T + ++G   IS   L+  +  
Sbjct: 477 DSCFIDSICPTQCDCYGTTVDCNKRGLNTIPTSIPRFATQLLLSG-NNISTVDLNSNIHV 535

Query: 469 LINLRNIEIRNVQHVIINERALAWLPFPRENEMNPGLRITIDNSTIDE 612
           L NL  +++ N     IN+++   L   RE  +N        +  +DE
Sbjct: 536 LENLEVLDLSNNHITFINDKSFEKLSKLRELRLNDNKLHHFSSMVLDE 583


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +1

Query: 241 IIFVLNTSLAQSNTVTVCQEDDCSCDSFTRLICNCTSADSE 363
           I+F +  ++AQ++++   ++  C C    +  C+C  A  +
Sbjct: 6   ILFAVALAVAQASSIRETRQASCGCAQSVQPTCSCQQASQQ 46


>L15201-5|AAA27943.2|  219|Caenorhabditis elegans Egg laying
           defective protein 5,isoform a protein.
          Length = 219

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 369 PKTRWPIPGTIHHHSNFYQRMRTNIIPVGYRPRSYQST*HRDQ 497
           P T WP   +       YQR +T+++   ++  SY S   R++
Sbjct: 98  PNTAWPNYASSKKGRQTYQRYQTSVLEAKFQQSSYVSKKQREE 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,629,228
Number of Sequences: 27780
Number of extensions: 335071
Number of successful extensions: 773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)