Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0948
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09570.1 68414.m01073 phytochrome A (PHYA) identical to SP|P1...    30   1.6  
At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR...    28   6.6  
At1g60440.1 68414.m06804 eukaryotic pantothenate kinase family p...    28   6.6  
At5g61060.1 68418.m07662 histone deacetylase family protein simi...    27   8.8  
At5g28940.1 68418.m03581 hypothetical protein                          27   8.8  

>At1g09570.1 68414.m01073 phytochrome A (PHYA) identical to SP|P14712
            Phytochrome A {Arabidopsis thaliana}
          Length = 1122

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 407  MVDGTRYGPSGLRVTSESALVQLHMS-LVNESQLQS 303
            M++GT  GP   R+   SAL Q  +S ++++S L+S
Sbjct: 920  MIEGTELGPEQRRILQTSALCQKQLSKILDDSDLES 955


>At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1294

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/71 (29%), Positives = 40/71 (56%)
 Frame = +1

Query: 403 TITAIFINGCGRISFLSDTVRDLINLRNIEIRNVQHVIINERALAWLPFPRENEMNPGLR 582
           ++ ++ ++GC R+  L DT+++L +L  +E+    +V  NE       FPR +     LR
Sbjct: 764 SLKSLNLDGCRRLENLPDTLQNLTSLETLEVSGCLNV--NE-------FPRVSTSIEVLR 814

Query: 583 ITIDNSTIDEI 615
           I+   ++I+EI
Sbjct: 815 IS--ETSIEEI 823


>At1g60440.1 68414.m06804 eukaryotic pantothenate kinase family
           protein similar to pantothenate kinase GI:4191500 from
           [Aspergillus nidulans]; contains Pfam profile PF03630:
           Fumble
          Length = 383

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 236 HHVVQR-MLNSSRHHFNHALPPTS 168
           HH VQR +LN S H+F H +P TS
Sbjct: 346 HHTVQRAILNCSGHNFRH-IPVTS 368


>At5g61060.1 68418.m07662 histone deacetylase family protein similar
           to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo sapiens};
           contains Pfam profile PF00850: Histone deacetylase
           family
          Length = 660

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 377 QMAHTGYHPPSQQFLSTDADEYHSCRIPSEILSIYVTSRS 496
           Q+ HT  H    + +ST   +Y   RI S++ SIY+   S
Sbjct: 83  QLVHTKDHVNLVKSISTKQKDYRRNRIASQLNSIYLNGGS 122


>At5g28940.1 68418.m03581 hypothetical protein
          Length = 485

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 23/98 (23%), Positives = 41/98 (41%)
 Frame = +1

Query: 322 FTRLICNCTSADSEVTLRPDGPYRVPSTITAIFINGCGRISFLSDTVRDLINLRNIEIRN 501
           F     N T      T+  D    +P T  +I + G   + +L D +  ++N+  +E   
Sbjct: 54  FKMAFVNSTFVSPCPTVTNDAYLSLP-TFESIIV-GELNLFYLVDVLGQVVNVGKVE--- 108

Query: 502 VQHVIINERALAWLPFPRENEMNPGLRITIDNSTIDEI 615
              +++N  +   L F   NEMN  L  T+     D++
Sbjct: 109 --DIVVNNESTKKLEFELRNEMNDRLPCTLWGKFADQV 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,462,067
Number of Sequences: 28952
Number of extensions: 302245
Number of successful extensions: 708
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)