Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0947
         (332 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,...    27   2.4  
At3g46400.1 68416.m05030 leucine-rich repeat protein kinase, put...    27   2.4  
At3g56260.1 68416.m06252 expressed protein                             27   4.1  

>At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,
           putative similar to SP|Q03460 Glutamate synthase [NADH],
           chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT)
           {Medicago sativa}
          Length = 2208

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 114 RYGLKGEAVVVTIIETLERISQGGWRIYVVDV 209
           R  LKG  + +  +E +++++  GWR  V+D+
Sbjct: 685 RLSLKGPLLKIEEMEAIKKMNYRGWRTKVLDI 716


>At3g46400.1 68416.m05030 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 883

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 158 LNYSYNDCFTLQTVTYYCFTAEIGRVMVPTRADSQEVLPPVITQI-IFCGFDF 3
           L+  Y    TL +V+   F  E+G+ ++  +      LPP++T I +F   DF
Sbjct: 308 LSPKYLKASTLYSVSP--FVCEVGKCLLELKRTQNSTLPPLLTAIEVFTVIDF 358


>At3g56260.1 68416.m06252 expressed protein 
          Length = 176

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 4   KSNPQNIICVITGGRTSCESARVGTIT 84
           +S+P + +C   GGR  C S+ +G++T
Sbjct: 122 RSSPTSTLCCSNGGRLGCSSS-MGSVT 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,963,648
Number of Sequences: 28952
Number of extensions: 154838
Number of successful extensions: 248
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)