Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0946
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 27 3.0
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 27 3.0
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 27 3.0
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 3.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.2
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 5.2
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 25 6.9
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 25 9.1
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 25 9.1
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom... 25 9.1
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 258 MLEARSSTVERARLSLAHEVKHRPSVP 338
M EA+SST E + L H+V+H+ S+P
Sbjct: 150 MTEAKSSTEEV--VELRHQVRHQVSIP 174
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 334 YLTVNGYRRSWTSAMPWTEPCHCLS-FNYDLFYLNS 438
Y++V Y R TS W +P H ++ + Y Y NS
Sbjct: 205 YISVCRYFRPGTSDTSWNQPIHLITYYRYLRLYPNS 240
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 167 KIGNHRSHLGHVDALLSILRPKPTVFGRN 81
++G + SH ++ + S+ RPK +F RN
Sbjct: 372 RLGTYNSHRWFLNGIASLARPKVCLFVRN 400
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -3
Query: 246 TSVPRLRWGSQFRAEEGQG--LSCVAARQDRQPSFASRPCRRVTVHSPPEADRFRPKSVR 73
T++P L + + E G + + ++ P +SRP ++ S P FRPK+
Sbjct: 285 TTIPPLPEFNDYFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSE 344
Query: 72 T 70
T
Sbjct: 345 T 345
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.2
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = -2
Query: 217 SVSGRRGTGAELRCRSTRSATIVRISAMSTRYCPFSARSRPFSAEICSNRACSKSGSCRK 38
S S + L S S++ S S+ S+ S P S+ S + SKS S
Sbjct: 310 SSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFS 369
Query: 37 STVSAVCS 14
STVS+ S
Sbjct: 370 STVSSSSS 377
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +3
Query: 249 RLVMLEARSSTVERARLSLAHEVKHRPSVPDGKW-LPSVVDFSNAMDR 389
RL + +S T SL +V H +G W L + NAM R
Sbjct: 322 RLPLFAEKSETNSNGEASLPSDVNHGVKEDEGSWQLIDIETAKNAMSR 369
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -2
Query: 97 PFSAEICSNRACSKSGSCRKSTVSAVCS 14
P ++C N C+ G C + SA C+
Sbjct: 59 PLIQQVCKNGTCAGDGFCNGTGGSASCT 86
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 205 RRGTGAELRCRSTRSATIVRISAMSTRYCP 116
+ G GA+L + T+ IVR+ TR P
Sbjct: 442 KSGAGAQLPMKDTQGQKIVRVGEQITRIQP 471
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 369 SPRPTVTIYRQVPKVYVSPHERGTVSRAP 283
+P+P I+ P+VY +P + +S P
Sbjct: 351 APKPVCVIHSVTPEVYKNPRYQSWISSFP 379
>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 416
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 30 TVDLRQEPDLLHARFEQI 83
TVDLR+E +L RF++I
Sbjct: 2 TVDLREEKELAQQRFKEI 19
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,713
Number of Sequences: 5004
Number of extensions: 57103
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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