Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0946
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)                     32   0.34 
SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_36189| Best HMM Match : ANATO (HMM E-Value=2.9)                     30   1.4  
SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)                 29   3.1  
SB_10460| Best HMM Match : rve (HMM E-Value=0.00013)                   29   3.1  
SB_49616| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)                 28   7.2  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_21513| Best HMM Match : Extensin_2 (HMM E-Value=4)                  28   7.2  
SB_19184| Best HMM Match : Pox_A32 (HMM E-Value=0.04)                  28   7.2  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      28   7.2  
SB_32990| Best HMM Match : Pox_A32 (HMM E-Value=0.023)                 28   7.2  
SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_28915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_57157| Best HMM Match : Seryl_tRNA_N (HMM E-Value=1.2)              27   9.6  
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.6  
SB_36180| Best HMM Match : BRAP2 (HMM E-Value=5.1)                     27   9.6  
SB_25281| Best HMM Match : DUF497 (HMM E-Value=2)                      27   9.6  

>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
          Length = 1168

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +3

Query: 120 Q*RVDMAEMRTMVADLVERQRSSAPVPLLP--ETENPNVVEELR*RLVMLEARSSTVERA 293
           Q R+ +   + ++ DL +    + P+P     ET+  +V+EE R R+  LE     VE+A
Sbjct: 619 QLRLQIESDKEVIEDLKQELEGTQPLPSGEDEETDEVDVLEEQRHRISSLEGHLKLVEKA 678

Query: 294 RL 299
           RL
Sbjct: 679 RL 680


>SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
 Frame = -3

Query: 369 SPRPTVTIYRQVPKVYVSPHERGTVSRAPQWSSSPPA*RAVTSVPRLRWGSQFRAEEG-- 196
           +P   +T+ + + K+   P  R TVS +   +S  P    V   P  RW S     E   
Sbjct: 5   TPSSKLTLTKGIQKLVPGPPSRSTVSISLISNSCSPGDPLVLERPPPRWSSNSPYSESYY 64

Query: 195 QGLSCVAARQDRQPSFASRPCRRVTVHSPPEADRFRPKSVRTGR 64
             L+ V  R+D +    ++   R+  H PP A     +  RT R
Sbjct: 65  NSLAVVLQRRDWENPGVTQ-LNRLAAH-PPFASWRNSEEARTDR 106


>SB_36189| Best HMM Match : ANATO (HMM E-Value=2.9)
          Length = 199

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 34  WTCGKSQTCCTPGSNRFRPKTVGFGRRMDSNASTWPRC-ERWLPILSSGNAA 186
           + CG+   CC  G  R+   +  FG    +    +P C +R LP   +G  A
Sbjct: 139 YRCGEYFPCCELGHCRYHTSSADFGSHKGTIVGVYPCCQQRVLPFDPTGQLA 190


>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
          Length = 1219

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 324 RPSVPDGKWLPSVVDFSNAM 383
           RP+ PDG W PS++   N++
Sbjct: 487 RPATPDGSWSPSIISKLNSL 506


>SB_10460| Best HMM Match : rve (HMM E-Value=0.00013)
          Length = 485

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -3

Query: 363 RPTVTIYRQVPKVYVSPHERGTVSRAPQWSSSPPA*RAVTSVPRLRWGSQFR 208
           RPT   +R+  + +V P   GT  R P   S+P    A+TS   L  GS F+
Sbjct: 195 RPT-DFWREAKRRFVRPSPGGTAERLPTRQSAPSRSMAITS---LLCGSTFK 242


>SB_49616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 193 GAELRCRSTRSATIVRISAMSTRYCPFSARSRPFSAEICSNR 68
           G   RCR  +++  +R       +C     SRPFS++  SN+
Sbjct: 18  GYARRCRFNKTSHWLRTKMPDVSWCAKQTNSRPFSSDKFSNK 59


>SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1292

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -3

Query: 213 FRAEEGQGLSCVAARQDRQPSFASRPCR----RVTVHSPPEADRFRPKSVRT 70
           F+ +EG+ ++C A+R D     A  P R     VTV + P+  R   K  +T
Sbjct: 127 FKQKEGEEVACFASRLDNHVRLAYAPKRVARSNVTVKAEPQEARESTKKEKT 178


>SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -2

Query: 193 GAELRCRSTRSATIVRISAMSTRYCPFSARSRPFSAEICSNRACSKSGSCRKSTVSAV 20
           GA+    S   + I R  ++S+R C   +R    S+ +CS  A S+ GS      SA+
Sbjct: 496 GAQGSISSRLCSAISRQGSISSRLCSAISRQGSISSRLCS--AISRQGSISSRLSSAI 551


>SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
          Length = 1640

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 363 RPTVTIYRQVPKVYVSPHERGTVSRAPQWSSSPPA*RAVTSV 238
           RPT   +R+  + +V P   GT+ R P   S+P    A+T++
Sbjct: 830 RPT-DFWREAKRRFVRPSPGGTMERPPPRQSAPSRSMAITNL 870


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 88   AEICSNRACSKSGSCRKSTVSAVCSARHE 2
            A+ CS+  C   GSC  S  S +C+   E
Sbjct: 3056 ADQCSSYPCKNGGSCANSGSSYICTCTSE 3084


>SB_21513| Best HMM Match : Extensin_2 (HMM E-Value=4)
          Length = 484

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 22/90 (24%), Positives = 40/90 (44%)
 Frame = -3

Query: 369 SPRPTVTIYRQVPKVYVSPHERGTVSRAPQWSSSPPA*RAVTSVPRLRWGSQFRAEEGQG 190
           +P+P        P+V      + +VS APQ ++  P   +V++ P++      +A     
Sbjct: 377 APQPHKASVSTAPQVTAPQPHKASVSTAPQVTAPQPHKASVSTAPQVTAPQPHKASVSTA 436

Query: 189 LSCVAARQDRQPSFASRPCRRVTVHSPPEA 100
              V A Q  + S ++ P  +VT   P +A
Sbjct: 437 PQ-VTAPQPHKASVSTAP--QVTAPQPHKA 463



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 22/90 (24%), Positives = 40/90 (44%)
 Frame = -3

Query: 369 SPRPTVTIYRQVPKVYVSPHERGTVSRAPQWSSSPPA*RAVTSVPRLRWGSQFRAEEGQG 190
           +P+P        P+V      + +VS APQ ++  P   +V++ P++      +A     
Sbjct: 329 APQPHKASVSTAPQVTAPQPHKASVSTAPQVTAPHPHKASVSTAPQVTAPQPHKASVSTA 388

Query: 189 LSCVAARQDRQPSFASRPCRRVTVHSPPEA 100
              V A Q  + S ++ P  +VT   P +A
Sbjct: 389 PQ-VTAPQPHKASVSTAP--QVTAPQPHKA 415


>SB_19184| Best HMM Match : Pox_A32 (HMM E-Value=0.04)
          Length = 540

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 363 RPTVTIYRQVPKVYVSPHERGTVSRAPQWSSSPPA*RAVTSV 238
           RPT   +RQ  + +V P   GT    P   S+P    A+TS+
Sbjct: 267 RPT-DFWRQAKRQFVRPSPGGTAEHLPPRRSAPSRSMAITSL 307


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 91   SAEICSNRACSKSGSCRKSTVSAVCSARHE 2
            + + CSN  C ++  C K T  + C  + E
Sbjct: 1000 ACDACSNHVCEENEDCDKKTYQSECHMKEE 1029


>SB_32990| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
          Length = 594

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 363 RPTVTIYRQVPKVYVSPHERGTVSRAPQWSSSPPA*RAVTSV 238
           RPT   +R+  + +V P   GT+ R P   S+P    A+T++
Sbjct: 142 RPT-DFWREAKRRFVRPSPGGTMERPPPRQSAPSRSMAITNL 182


>SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
 Frame = -3

Query: 369 SPRPTVTIYRQVPKVYVSPHERGTVSRAPQWSSSPPA*RAVTSVPRLRWGSQFRAEEG-- 196
           +P   +T+ +   K+   P  R TVS +   +S  P    V   P  RW S     E   
Sbjct: 5   TPSSKLTLTKGNRKLVPGPPSRSTVSISLISNSCSPGDPLVLERPPPRWSSNSPYSESYY 64

Query: 195 QGLSCVAARQDRQPSFASRPCRRVTVHSPPEADRFRPKSVRTGR 64
             L+ V  R+D +    ++   R+  H PP A     +  RT R
Sbjct: 65  NSLAVVLQRRDWENPGVTQ-LNRLAAH-PPFASWRNSEEARTDR 106


>SB_28915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 67  PGSNRFRPKTVGFGRRMDSNASTWPRCERWLPILSSGNAAQPLSLFCPKLRTPT*S-RN* 243
           P  NR+ P T     ++ SN+S   RC + L + +     Q LSL+   L+    S  N 
Sbjct: 185 PSCNRYLPSTEF---KLSSNSSVVGRCRKCLKLDNDARLRQDLSLYRAMLKDLRRSEENI 241

Query: 244 GDGS 255
            DGS
Sbjct: 242 DDGS 245


>SB_57157| Best HMM Match : Seryl_tRNA_N (HMM E-Value=1.2)
          Length = 334

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 39  LRQEPDLLHARFEQISAENGRLRAEN 116
           L QE   L+ +FEQ+S++  RL+AEN
Sbjct: 145 LVQELAALNGKFEQLSSKFSRLQAEN 170


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 171  ERQRSSAPVP-LLPETENPNVVEELR*RLVMLEARSSTVERARLSLAHE 314
            E+  S+ P+P LLPE   P V  E+R R    E ++   E++++    E
Sbjct: 1450 EQNLSAIPLPVLLPEVAEPKVTSEIRKRQNKAE-KAQPAEKSKMQTKSE 1497


>SB_36180| Best HMM Match : BRAP2 (HMM E-Value=5.1)
          Length = 751

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 363 RPTVTIYRQVPKVYV--SPHERGTVSRAPQWSSSPPA*RAVTSV 238
           RPT   +R+  + +V  SP E GT  R P   S+P    A+TS+
Sbjct: 611 RPT-DFWREAKRRFVRPSPGEGGTAERLPPRQSAPSRSMAITSL 653


>SB_25281| Best HMM Match : DUF497 (HMM E-Value=2)
          Length = 754

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 363 RPTVTIYRQVPKVYV--SPHERGTVSRAPQWSSSPPA*RAVTSV 238
           RPT   +R+  + +V  SP E GT  R P   S+P    A+TS+
Sbjct: 637 RPT-DFWREAKRRFVRPSPGEGGTAERLPPRQSAPSRSMAITSL 679


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,592,802
Number of Sequences: 59808
Number of extensions: 472273
Number of successful extensions: 1293
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)