Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0946
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003143-1|ABD63238.1|   80|Caenorhabditis elegans Hypothetical ...    33   0.22 
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    31   0.91 
X70830-1|CAA50178.1|  534|Caenorhabditis elegans Cytoplasmic int...    29   2.1  
U51997-4|AAG24068.1|  115|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U49831-7|AAA93408.1|  558|Caenorhabditis elegans Intermediate fi...    29   2.1  
U49831-6|AAA93407.1|  589|Caenorhabditis elegans Intermediate fi...    29   2.1  
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso...    29   2.8  
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso...    29   2.8  
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso...    29   2.8  
Z46241-3|CAA86317.1|  556|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF003144-4|AAB54197.2|  164|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z77659-7|CAB01166.2|  137|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U67953-5|AAL13330.2|  287|Caenorhabditis elegans Male abnormal p...    27   8.4  
AY742796-1|AAW59416.1|  287|Caenorhabditis elegans MAB-7 protein.      27   8.4  

>AF003143-1|ABD63238.1|   80|Caenorhabditis elegans Hypothetical
           protein C53H9.3 protein.
          Length = 80

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 405 QAVAWLCPWHC*SPRPTVTIYRQVPKVYVSPHERGTVSR 289
           Q++ W CPWH  S RP    Y+   K+ V   E+ T +R
Sbjct: 13  QSIRWNCPWHRNSFRPCYFPYKLQEKLNVDTVEKRTETR 51


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -2

Query: 208 GRRGTGAELRCRSTRSATIVRISAMSTRYCPFSARSRPFSAEICSNRACSKSGSC 44
           G  G G E R  +   A ++ I++  TR CP +  +R    ++  N  C+ +G C
Sbjct: 237 GDSGGGLEYRDDNYGRAFLIAITSFGTRGCPSNMLARFTRVDMYLNLICNYTGVC 291


>X70830-1|CAA50178.1|  534|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 534

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +3

Query: 21  TAETVDLRQEPDLLHARFEQISAENGRLRAENGQ*RVDMAEMRTMVAD 164
           T    D + E ++L ARF+Q++ E  R+ A+N +   ++ + R+ + D
Sbjct: 157 TNAIADAQSEVEMLRARFKQLTDEEKRVTADNSRIWEELQKARSDLDD 204


>U51997-4|AAG24068.1|  115|Caenorhabditis elegans Hypothetical
           protein F19G12.3 protein.
          Length = 115

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 375 C*SPRPTVTIYRQVPKVYVSPH 310
           C SP P  + +R  P +Y+SPH
Sbjct: 78  CKSPHPRHSTFRHTPPLYISPH 99


>U49831-7|AAA93408.1|  558|Caenorhabditis elegans Intermediate
           filament, b protein1, isoform a protein.
          Length = 558

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +3

Query: 21  TAETVDLRQEPDLLHARFEQISAENGRLRAENGQ*RVDMAEMRTMVAD 164
           T    D + E ++L ARF+Q++ E  R+ A+N +   ++ + R+ + D
Sbjct: 157 TNAIADAQSEVEMLRARFKQLTDEEKRVTADNSRIWEELQKARSDLDD 204


>U49831-6|AAA93407.1|  589|Caenorhabditis elegans Intermediate
           filament, b protein1, isoform b protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +3

Query: 21  TAETVDLRQEPDLLHARFEQISAENGRLRAENGQ*RVDMAEMRTMVAD 164
           T    D + E ++L ARF+Q++ E  R+ A+N +   ++ + R+ + D
Sbjct: 188 TNAIADAQSEVEMLRARFKQLTDEEKRVTADNSRIWEELQKARSDLDD 235


>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform a
           protein.
          Length = 4488

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 24  AETVDLRQEPDLLHARFEQISAENGRLRAENGQ*RVDMAEMRTMVADLVERQRS 185
           AE   +R+E D L   FE+  AE  RL  E  Q   +    +     L ER++S
Sbjct: 35  AENRRIREEQDRLRVLFEREKAERERLEEERRQLEHEKRLRQQQQQQLFEREKS 88


>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform d
           protein.
          Length = 4369

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 24  AETVDLRQEPDLLHARFEQISAENGRLRAENGQ*RVDMAEMRTMVADLVERQRS 185
           AE   +R+E D L   FE+  AE  RL  E  Q   +    +     L ER++S
Sbjct: 35  AENRRIREEQDRLRVLFEREKAERERLEEERRQLEHEKRLRQQQQQQLFEREKS 88


>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin
           (drosophila actin-binding)homolog protein 1, isoform c
           protein.
          Length = 4447

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 24  AETVDLRQEPDLLHARFEQISAENGRLRAENGQ*RVDMAEMRTMVADLVERQRS 185
           AE   +R+E D L   FE+  AE  RL  E  Q   +    +     L ER++S
Sbjct: 35  AENRRIREEQDRLRVLFEREKAERERLEEERRQLEHEKRLRQQQQQQLFEREKS 88


>Z46241-3|CAA86317.1|  556|Caenorhabditis elegans Hypothetical
           protein C38D4.4 protein.
          Length = 556

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +3

Query: 258 MLEARSSTVERARLSLAHEVKHRPSVPDGKWLPSVVDFSNAMDRAMPL 401
           +L    + V+R   ++A  V  +P + D K +PS+VDFSN + R M L
Sbjct: 205 LLRQPVTVVQRLSSTVAVPVL-QPGI-DSKCMPSIVDFSNNVKRMMLL 250


>AF003144-4|AAB54197.2|  164|Caenorhabditis elegans Hypothetical
           protein C55C2.1 protein.
          Length = 164

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 115 FSARSRPFSAEICSNRACSKS 53
           FSA  +PF  EICS R   KS
Sbjct: 101 FSAGEKPFQCEICSKRFADKS 121


>Z77659-7|CAB01166.2|  137|Caenorhabditis elegans Hypothetical
           protein F23B12.4 protein.
          Length = 137

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +1

Query: 43  GKSQTCCTPGSNRFRPKTVGFGRRMDSNASTWPRCERWLPILSSGNAAQPLSLFCPK 213
           G+S +      N F+     FG    ++     RC +W    +S +  Q L+ FC +
Sbjct: 73  GQSNSFAAQRQNVFQQPQPAFGGGQCADRDPQGRCSQWRQFCASPSHQQYLTAFCAR 129


>U67953-5|AAL13330.2|  287|Caenorhabditis elegans Male abnormal
           protein 7 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 151 VRISAMSTRYCPFSARSRPFSAEICSNRACSKSGSCRKSTVSAVCS 14
           +RI A  T+      +   F+ E C N  C   G+C    +S  C+
Sbjct: 16  IRIPAAGTKTTQLIFKR--FTEETCQNDPCLNGGTCTPGKLSCTCA 59


>AY742796-1|AAW59416.1|  287|Caenorhabditis elegans MAB-7 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 151 VRISAMSTRYCPFSARSRPFSAEICSNRACSKSGSCRKSTVSAVCS 14
           +RI A  T+      +   F+ E C N  C   G+C    +S  C+
Sbjct: 16  IRIPAAGTKTTQLIFKR--FTEETCQNDPCLNGGTCTPGKLSCTCA 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,604,913
Number of Sequences: 27780
Number of extensions: 341199
Number of successful extensions: 1035
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)