Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0946
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15380.1 68417.m02350 cytochrome P450 family protein similar ...    33   0.16 
At1g67920.1 68414.m07756 expressed protein                             29   1.9  
At3g12520.1 68416.m01558 sulfate transporter family protein simi...    29   2.6  
At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2) ide...    28   5.9  
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi...    28   5.9  
At4g08380.1 68417.m01384 proline-rich extensin-like family prote...    28   5.9  
At3g20040.1 68416.m02535 hexokinase, putative similar to hexokin...    28   5.9  
At5g01680.1 68418.m00085 cation/hydrogen exchanger, putative (CH...    27   7.8  

>At4g15380.1 68417.m02350 cytochrome P450 family protein similar to
           CYTOCHROME P450 93A3  (P450 CP5) (SP:O81973)  [Glycine
           max]
          Length = 517

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
 Frame = +3

Query: 33  VDLRQEPDLLHARFEQISAENGRLRAENGQ*RVDMAEMRTMVADLV----ERQRSSAPVP 200
           V+  ++ D+ H R + + A     R EN + ++    +++++ADL+    E Q  +    
Sbjct: 260 VEHEKKLDVHHQRTDLMDALLAAYRDENAEYKITRNHIKSIIADLLFAGTENQVQTIQWA 319

Query: 201 LLPETENPNVVEELR*RLVMLEARSSTVERARL 299
           +     NPNV+E LR  +  +  +S  ++   L
Sbjct: 320 MAEIINNPNVLERLRGEIDSVVGKSRLIQETDL 352


>At1g67920.1 68414.m07756 expressed protein
          Length = 67

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/53 (28%), Positives = 32/53 (60%)
 Frame = +3

Query: 45  QEPDLLHARFEQISAENGRLRAENGQ*RVDMAEMRTMVADLVERQRSSAPVPL 203
           ++  ++H++ E+I  E  ++R    Q  +   EMR +++++  RQRS +P+ L
Sbjct: 10  EDGPIIHSQVEKIKKEFEKIR----QPSLQQPEMRRVLSEIKRRQRSRSPLGL 58


>At3g12520.1 68416.m01558 sulfate transporter family protein similar
           to sulfate transporter [Arabidopsis thaliana]
           GI:3777483; contains Pfam profiles PF00916: Sulfate
           transporter family, PF01740: STAS domain
          Length = 677

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 542 YESILSFLLLRWVDELTAHLVLSGY 616
           +ESI+ FL L W+    +H V+SG+
Sbjct: 175 FESIMGFLRLGWLIRFISHSVISGF 199


>At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2)
           identical to phage-type RNA polymerase rpoT2
           [Arabidopsis thaliana] GI:11340683
          Length = 1011

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +3

Query: 156 VADLVERQRSSAPVPLLPETENPNVVEELR*RLVMLEARSST--VERARLSLAHEVKHRP 329
           VAD+V+R  S  P+P  P+TE+  ++++ +  +   +  +S    +R    L   V  + 
Sbjct: 520 VADMVDR--SDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKM 577

Query: 330 SVPDGKWLPSVVDFSNAMDRAMPLP 404
              +  + P  +DF     RA P+P
Sbjct: 578 KDEEAFYYPHNMDFRG---RAYPMP 599


>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
           PF00010 helix-loop-helix DNA-binding domain; PMID:
           12679534; putative bHLH131 transcription factor
          Length = 1513

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 27  ETVDLRQEPDLLHARFEQISAENGRLRAEN 116
           E  +LRQ   +  A F+++  ENG+L  EN
Sbjct: 298 EVAELRQTLSMKDAYFKEMKYENGKLEQEN 327


>At4g08380.1 68417.m01384 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 437

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 384 PWHC*SPRPTVTIYRQVPKVYVSPHERGTVSRAPQWSSSPP 262
           P +  SP P+  +Y+  P VY SP      S  P ++ SPP
Sbjct: 116 PPYAYSPPPSPYVYKSPPYVYSSPPPY-VYSSPPPYAYSPP 155


>At3g20040.1 68416.m02535 hexokinase, putative similar to hexokinase
           1 [Spinacia oleracea] Swiss-Prot:Q9SEK3
          Length = 488

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 233 DYVGVLSFGQKRDRG*AALPLDKIGNHRSHLGHVDALLSILRPKPT 96
           D VG LSFG   D    A  +   G++  +L   DA++    P+ T
Sbjct: 230 DTVGALSFGHFHDPDTIAAVVFGTGSNACYLERTDAIIKCQNPRTT 275


>At5g01680.1 68418.m00085 cation/hydrogen exchanger, putative
           (CHX26) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 780

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 479 VCDAMIKDITEPILRTDKPMGYESILSFLLLRWVDELTA 595
           VC+A +   +  +LR D P+ Y + L  LL+  V  L++
Sbjct: 14  VCEAWLGSSSGGLLRGDDPLKYSTPLLLLLISLVSSLSS 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,901,841
Number of Sequences: 28952
Number of extensions: 321620
Number of successful extensions: 932
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)