Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0944
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711... 34 0.13
12_01_0030 + 262452-263210,263332-263575,263867-264165 30 2.1
05_07_0344 + 29411767-29411961,29412692-29412741,29413295-294134... 29 3.7
12_02_0469 - 19424703-19424906,19425073-19425142,19425409-194263... 29 4.9
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145... 29 4.9
01_06_0740 + 31603996-31604820,31605080-31605391 29 4.9
10_06_0099 - 10677024-10677073,10677894-10677998,10678254-106783... 28 6.5
05_01_0388 - 3036436-3036672,3037195-3037305,3037545-3037644,303... 28 6.5
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 28 8.6
07_01_0472 - 3571989-3572042,3572126-3572233,3572251-3572478,357... 28 8.6
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728... 28 8.6
>02_02_0138 +
7114949-7115656,7116388-7116435,7116830-7117988,
7118336-7118424,7118697-7118732
Length = 679
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = +2
Query: 176 GP*ATSLLAPTSLPTPTSQVALLEPLPTQHPSCRPCRSHRLHHFPSQLI 322
GP T +APT PTP PLP +H C R R H PS L+
Sbjct: 22 GPSLTVTVAPTPPPTPLDPRGY--PLPRRHLVCAAARILRSHASPSPLL 68
>12_01_0030 + 262452-263210,263332-263575,263867-264165
Length = 433
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 342 CRPLLDQMSCDGK*CSRCD--RHGLHEGCCVGSGS 244
C P+ + +C G+ CS CD R LH C GS S
Sbjct: 324 CSPVQNYNACFGRLCSFCDEPRTILHPPCATGSHS 358
>05_07_0344 +
29411767-29411961,29412692-29412741,29413295-29413430,
29413931-29414032,29414153-29414380,29414460-29414544,
29414648-29414730,29414854-29414945,29415048-29415141
Length = 354
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Frame = +1
Query: 73 KTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPV---SYIAPSSYITPNTYIASGPL 243
++PL A Y T L+ + + H P W + Y P P+ YI P
Sbjct: 148 ESPLCAMNPY-GRTKLVIEDMCRDLH---ASDPNWKIILLRYFNPVG-AHPSGYIGEDPC 202
Query: 244 GATTYTTPFVQTVPIASTASLPV 312
G PFVQ V + +L V
Sbjct: 203 GIPNNLMPFVQQVAVGRRPALTV 225
>12_02_0469 -
19424703-19424906,19425073-19425142,19425409-19426302,
19426975-19427124,19427382-19427572,19427713-19427835
Length = 543
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/75 (20%), Positives = 29/75 (38%)
Frame = +3
Query: 240 SWSHYLHNTLRADRADRIDCITSRRNSSDQEEVCTRSGHNLHRTYYLHRCSARSFFSSIQ 419
S Y+ N+ + D +C N S + S HN+ + + +++ +Q
Sbjct: 20 STDSYMDNSSNTNDDDYAECSLGDHNKSQPND--PSSSHNVFHSVEEDNVALDEYWNIVQ 77
Query: 420 LQFARRSSCYILHTS 464
+ F CY + S
Sbjct: 78 MNFQTEDECYNFYNS 92
>09_02_0601 +
11112201-11112386,11112471-11114080,11114345-11114579,
11115233-11115358
Length = 718
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 203 PTSLPTPTSQVALLEPLPTQHPSCRPCRSH 292
PT P+P+ Q LL P P Q P + H
Sbjct: 438 PTPPPSPSQQPPLLAPQPVQASPTSPAKQH 467
>01_06_0740 + 31603996-31604820,31605080-31605391
Length = 378
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = -1
Query: 327 DQMSCDGK*CSRCDRHGLHEGCCVGSGSKRATCDVGVGSDVGARSDVAHGP 175
D M+CDG+ HG H G + DVG GS AR+ A P
Sbjct: 182 DAMACDGRFVMDVLLHGHHHGGAQLFRGITSLVDVGGGSGGAARASAAAFP 232
>10_06_0099 -
10677024-10677073,10677894-10677998,10678254-10678315,
10678694-10679197,10679695-10680356,10680695-10680793,
10680881-10681110,10681227-10681278,10681391-10681577,
10681661-10681873,10682006-10682175,10683455-10683730,
10684188-10684643,10685527-10685766,10687517-10687771
Length = 1186
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 427 LHGAPLVTSYTPLVYSAPISTHVI*VEMKNNKHSDSDKAVLRNTTT 564
L +P+ Y P+++S H+I V+M + K D D +LR+ T
Sbjct: 378 LQPSPVQDEYAPVIFSQETVKHIISVDMMSGK-EDRDN-ILRSRAT 421
>05_01_0388 -
3036436-3036672,3037195-3037305,3037545-3037644,
3037755-3037804,3037888-3038178,3038318-3038470
Length = 313
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/75 (20%), Positives = 29/75 (38%)
Frame = +3
Query: 240 SWSHYLHNTLRADRADRIDCITSRRNSSDQEEVCTRSGHNLHRTYYLHRCSARSFFSSIQ 419
S Y+ N+ + D +C N S + S HN+ + + +++ +Q
Sbjct: 30 STDSYMDNSSNTNDDDYAECSLGDHNKSKPND--PSSSHNVFHSVEEDNVALDEYWNIVQ 87
Query: 420 LQFARRSSCYILHTS 464
+ F CY + S
Sbjct: 88 MNFQTEDECYNFYNS 102
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 170 HNGP*ATSLLAPTSLPTPTSQVALLEPLPTQHPS 271
H+ P PT+ P+P LL+P P +PS
Sbjct: 307 HSAPLLQPFPLPTASPSPPYGTPLLQPFPPPNPS 340
>07_01_0472 -
3571989-3572042,3572126-3572233,3572251-3572478,
3573007-3573111,3573310-3573399,3573765-3574256
Length = 358
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Frame = +1
Query: 91 STSYVSSTPLISQ------PIAYSAHFIKKRSPQWPVSYIAPS---SYITPNTYIASGPL 243
STS+ P ++ P +Y+A+ + K SP+W + + S + T SG L
Sbjct: 226 STSHAKYVPFLAPFIGGALPGSYAAYHLVKHSPEWVMGVVFGSISLGFFAACTGTVSGLL 285
Query: 244 GATTYTTPFVQTVPIASTASL 306
G ++ T + + I + +L
Sbjct: 286 GTSSATFQYSRFAAITTFTAL 306
>06_03_0794 -
24671955-24672362,24672469-24672505,24672804-24672858,
24674044-24674167,24674670-24674903
Length = 285
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 166 SPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFV 273
+PQ + A TP + SGP G TTYT FV
Sbjct: 2 TPQRSPAAAAAGGGGTPALHYLSGPYGDTTYTKVFV 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,949,224
Number of Sequences: 37544
Number of extensions: 338568
Number of successful extensions: 1067
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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