Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0944
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical p...    29   3.3  
U30248-1|AAC13874.1|  399|Caenorhabditis elegans transcription f...    29   3.3  
U13614-1|AAA21347.1|  399|Caenorhabditis elegans protein ( Caeno...    29   3.3  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 187 YIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLP 309
           +I PSS I  N +    P     YTT    T P++ TA LP
Sbjct: 295 FIRPSSIIRNNVWKKVTPSVTPEYTTSVFWTTPMSVTAELP 335


>Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical
           protein K02E2.8a protein.
          Length = 188

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +1

Query: 151 FIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPVAT 318
           F+K  +   P  ++ P   + P T   +  + A T T P   T P+++T +    T
Sbjct: 7   FVKLAAACIPTQFVTP---LNPGTITTTTTISAPTTTVPITTTNPVSTTTTTTTTT 59


>Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 185 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 271
           +TS  AP++ P PTS   +LE  PT  P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128


>Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 185 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 271
           +TS  AP++ P PTS   +LE  PT  P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128


>U30248-1|AAC13874.1|  399|Caenorhabditis elegans transcription
           factor E12/47 homolog protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 185 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 271
           +TS  AP++ P PTS   +LE  PT  P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128


>U13614-1|AAA21347.1|  399|Caenorhabditis elegans protein (
           Caenorhabditis elegansN2 basic-helix-loop-helix
           transcription factor E12/47homolog mRNA, complete cds.
           ).
          Length = 399

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 185 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 271
           +TS  AP++ P PTS   +LE  PT  P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 26/85 (30%), Positives = 38/85 (44%)
 Frame = +1

Query: 91   STSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPF 270
            S+SY S     S+    S    K+RSPQ PVS I  +    P    ++G L +T    P 
Sbjct: 3027 SSSYTSDA---SESTVQSTVVNKRRSPQPPVSPIPRA----PPLRNSNGFLASTNNFQPL 3079

Query: 271  VQTVPIASTASLPVATHLIKKRSAP 345
               +P+ S    P   H ++  +AP
Sbjct: 3080 PTDIPMRSD---PELNHFVELHAAP 3101


>U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical
           protein F56D3.1 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 214 PNTYIASGPLGATTYTT-PFVQTVPIASTASLPVA 315
           P T   + P  ATT  T PFVQT P A+ A+LP A
Sbjct: 114 PTTIRTTRPPPATTIRTIPFVQTTP-ATFATLPPA 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,767,864
Number of Sequences: 27780
Number of extensions: 283051
Number of successful extensions: 880
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)