Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0942
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    29   0.91 
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   8.5  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    25   8.5  

>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +1

Query: 64  RKLYRIPH---LVIIQGCYVV*GCY*KRKGAGDELTPKEKCSGQ*ALGEGLCDIEHRKSS 234
           R LY + H   ++  QG Y +   Y K+   G    P+  C+GQ  L  GL DI H KS 
Sbjct: 81  RHLYGLIHARYILTAQGLYKMLEKY-KKCDFGH--CPRVLCNGQPMLPVGLSDIAHTKSV 137

Query: 235 SPSCVR 252
              C R
Sbjct: 138 KLYCPR 143


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 212 SHSPSPSAHCPLHFSLGVNSSPAP 141
           S +P+P +  PLHF+   NSSP P
Sbjct: 213 SFNPTPFSSSPLHFT---NSSPNP 233


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
 Frame = +3

Query: 591 LINF--LRAVIFKIFNFPYNFRST--HNF---HKVFSSYI*IRHHFDELTRLVKR 734
           LI+F  ++ +I+++  +PY  R T  +N     K     +  +HHFDEL   +K+
Sbjct: 335 LISFGTIKGLIYRVHKYPYLERRTMRNNLTEEEKKLLGLLDGKHHFDELCVTLKK 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,086
Number of Sequences: 5004
Number of extensions: 69678
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)