Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0942
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59770.1 68416.m06670 sacI homology domain-containing protein...    31   1.1  
At1g17920.1 68414.m02218 homeobox-leucine zipper family protein ...    30   1.4  
At4g39410.1 68417.m05578 WRKY family transcription factor identi...    29   3.2  
At5g15310.1 68418.m01793 myb family transcription factor contain...    27   9.8  

>At3g59770.1 68416.m06670 sacI homology domain-containing protein / WW
            domain-containing protein contains Pfam profiles PF00397:
            WW domain, PF02383: SacI homology domain; identical to
            cDNA SAC domain protein 9 (SAC9) GI:31415734
          Length = 1630

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 184  VRCTFPWVLTHLQHLSSSNSIPTQRNIPV*SPDE 83
            VRC   W+   L  L SS+S+   +NI + S DE
Sbjct: 1365 VRCRIIWITLRLPRLGSSSSVSLDKNINLLSLDE 1398


>At1g17920.1 68414.m02218 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           A20 (GI:1881536) [Arabidopsis thaliana]; similar to
           homeobox protein GI:1173622 from [Phalaenopsis sp.
           SM9108]
          Length = 687

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 327 NRDSSPTRKRNKEE*NFLTHTPYNSKAVGS 416
           N DSS T K+NK++  F  HTP+  + + S
Sbjct: 9   NHDSSETEKKNKKKKRFHRHTPHQIQRLES 38


>At4g39410.1 68417.m05578 WRKY family transcription factor identical
           to WRKY transcription factor 13 GI:15991729 from
           [Arabidopsis thaliana]
          Length = 304

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 229 SSSPSCVRSPGFILVPFMP*RVTPTFASDVPSSTETHPQQGREIKRN 369
           SSS S   SP  ++ PF+      +F  + PSS  +HPQ    +  N
Sbjct: 40  SSSSSSSSSPSSLVSPFLGHNSLNSFLHNNPSSFISHPQDSINLMTN 86


>At5g15310.1 68418.m01793 myb family transcription factor contains
           PFAM profile: myb DNA-binding domain PF00249
          Length = 326

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -1

Query: 579 KNKWKFSAQERFVTRLALLGSRYLSIAPRMCKMVTKNQISD--RTHLVLVIVKL 424
           + K+    ++  +   ALLG+R+ +IA  + K  T N+I +   THL   +VK+
Sbjct: 67  RGKFNLQEEQTIIQLHALLGNRWSAIATHLPKR-TDNEIKNYWNTHLKKRLVKM 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,301,538
Number of Sequences: 28952
Number of extensions: 360211
Number of successful extensions: 797
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)