Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0939
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0014 + 84379-84600,84737-84830,84935-85086,85212-85299,853...    28   7.4  
02_05_1133 + 34346894-34347121,34347222-34347283,34347373-343474...    28   9.8  

>01_01_0014 +
           84379-84600,84737-84830,84935-85086,85212-85299,
           85348-86681,87291-87398,87500-87583
          Length = 693

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 137 SFKFSLDVIPENSYHLPN--H*VVLATLVLATNENKNIHQKKKPR 9
           S+K  L  + EN YH+ N  H V+L+T    T++    H+ K PR
Sbjct: 174 SYKRMLPFVTENGYHIANLSHHVLLSTFSEITSQEG--HRTKIPR 216


>02_05_1133 +
           34346894-34347121,34347222-34347283,34347373-34347460,
           34348005-34348268,34348346-34348586,34348672-34348748,
           34348837-34349007,34349084-34349176,34349257-34349406,
           34349491-34349577,34349656-34349820,34349900-34350019,
           34350244-34350446,34350547-34350696,34350779-34350926,
           34351046-34351129,34351207-34351308
          Length = 810

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 150 FYNFYKSKIRSNYFRREFNRYVFWFEILKREIPSLAP 260
           F N YK   R    ++  +    WF+ILK +I +  P
Sbjct: 367 FQNLYKKYEREGKAKKVVSAQALWFDILKAQIETGTP 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,706,887
Number of Sequences: 37544
Number of extensions: 367527
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)