Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0938
         (575 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    26   0.26 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   5.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.5  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +3

Query: 198 GGRCKCNGHASRCIPMKEG---EGSSAGGVVQLACDCKHNTAGRDCE 329
           G  C+ +G+     P + G     S  GG +   CDC   T G +CE
Sbjct: 370 GKNCEFSGYDCDSNPCQNGGVCRISDGGGYI---CDCPSGTNGTNCE 413



 Score = 23.0 bits (47), Expect = 1.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = +3

Query: 210 KCNGHASRCIPMKEGEGSSAGGV--VQLA----CDCKHNTAGRDCE 329
           +C G  + C+       S+AG +  VQL     C+CK    GR CE
Sbjct: 294 RCEGDINECL---SNPCSNAGTLDCVQLVNDYHCNCKLGFMGRHCE 336



 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = +3

Query: 258 GSSAGGVVQLACDCKHNTAGRDCE 329
           G+   G+    C CK    G +C+
Sbjct: 36  GTCIDGINSYICTCKPGFTGSNCQ 59


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 343 STSIDPGAARPPETPT 390
           ST+  P  ARPP TP+
Sbjct: 405 STTPRPEWARPPSTPS 420


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +1

Query: 283  NWPATASTTPP 315
            NWP   +T PP
Sbjct: 1078 NWPTQGTTIPP 1088



 Score = 20.6 bits (41), Expect = 9.9
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 289  PATASTTPPVEIARDASRSTSIDPGAARPPE 381
            P T STT         ++ T+I P A   PE
Sbjct: 1065 PTTTSTTTRPTTTNWPTQGTTIPPPAVVMPE 1095


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,512
Number of Sequences: 336
Number of extensions: 2971
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)