Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0938
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    27   2.6  
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    25   6.0  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   6.0  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    25   6.0  
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.0  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   7.9  
SPAC19B12.09 |srp14||signal recognition particle subunit Srp14|S...    25   7.9  

>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 24  RPSAANFDLSPVLQDWVTATDVRVVFN 104
           +P++ NF LS +L+  +TA    +V+N
Sbjct: 92  KPNSRNFQLSNILEPVITAKHTCIVYN 118


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
 Frame = -1

Query: 422 TRSEYHSTFTFVGVSGGRAAPGSIEVERLASLAISTGGVVLAVAGQLHYSTSAGALSFLH 243
           T+ E  S ++F+G S  R    + + + LA L      V  A    L  S S GA+ ++ 
Sbjct: 56  TQGESVSRYSFIG-SPYRILMANGKTDPLARLERELKEVKTAPVEGLP-SFSGGAVGYVS 113

Query: 242 RDAARRVPVALAPTSDGEIRYRVVLCARSRLLLQIYLVAFVDHVQAIKHDSHVC--RGHP 69
            D  +       PT++  +   + L   +   +   LVAF    Q +K  SHVC  +G P
Sbjct: 114 YDCIKY----FEPTTEMPLEDTLGL-PEAMFFMTDDLVAFDHAYQTVKIISHVCIQQGRP 168

Query: 68  V 66
           +
Sbjct: 169 I 169


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 340 RSTSIDPGAARPPETPTN 393
           RSTS+ P +++PP  PT+
Sbjct: 65  RSTSLQPPSSQPPAPPTH 82


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = -1

Query: 374 GRAAPGSIEVERLASLAISTGGVVLAVAGQLHYSTSAGALSFLHRDAARRVPVALAPTSD 195
           G A+P  + VE    +A    G+ L      H+S  AG  + L ++  R V +  A  ++
Sbjct: 89  GSASP-ELAVEAAKLVANDVAGIDLNCGCPKHFSVHAGMGAGLLKNQDRLVSILDALVNE 147

Query: 194 GEIRYRVVLCARSRLL 147
               Y++ +  + RLL
Sbjct: 148 IGKPYKISISCKIRLL 163


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 366 GPRVDRSGTACISRNLDRRCCACSRRPVALLHQRWSPLLPS 244
           GPR+   G AC S + D   C  ++  VA    +W+ + P+
Sbjct: 44  GPRLHCKGPACSSHSNDLAICQHNQLNVAPHLLKWTCVWPN 84


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 185 RYRVVLCARSRLLLQIYLVAFVDHVQAIKHDSHVCRGHP 69
           R+R   C R  LL  I++V F   + A K D++    HP
Sbjct: 570 RFRSRCCFRLGLLFSIFVVGFSSFILA-KQDTYYDSLHP 607


>SPAC19B12.09 |srp14||signal recognition particle subunit
           Srp14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 225 ASRCIPMKEGEGSSAGGVVQ 284
           + +C P+ EGEGSSA  +++
Sbjct: 30  SQKCNPVDEGEGSSASVLIR 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,167
Number of Sequences: 5004
Number of extensions: 46671
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)