Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0938
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 32 0.28
12_02_0709 - 22359705-22360292,22360396-22360560,22360650-223611... 30 1.5
08_02_1230 + 25419533-25420446,25421098-25421279,25422197-254225... 29 2.7
07_03_0951 - 22836167-22836358,22836455-22837213 29 2.7
01_06_0560 + 30244814-30244871,30244979-30245140,30245725-302457... 29 2.7
06_03_0002 - 15280292-15281550,15282714-15282840 29 3.5
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 28 4.6
04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412 28 4.6
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605... 28 6.1
02_05_0505 - 29605860-29606102,29606331-29606677,29607291-296074... 28 6.1
02_02_0221 + 8006708-8006950,8007049-8007252,8007559-8007750,800... 28 6.1
08_02_0769 - 21012521-21013331,21013692-21013821,21013915-21014047 27 8.1
03_05_0924 + 28861561-28861692,28861970-28862262,28862841-28863657 27 8.1
03_02_0858 + 11848128-11848287,11848906-11848973,11849281-118494... 27 8.1
02_04_0566 - 23912651-23913862 27 8.1
01_07_0196 + 41910225-41910363,41910650-41911218 27 8.1
01_01_0287 - 2371323-2371482,2371582-2371988,2372526-2372552,237... 27 8.1
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 289 PATASTTPPVEIARDASRSTSIDPGAARPPETP 387
P +++PPV R SRS S DP +R P+ P
Sbjct: 527 PDHRNSSPPVNRGRSRSRSKSRDPSKSRSPDAP 559
>12_02_0709 -
22359705-22360292,22360396-22360560,22360650-22361157,
22361159-22361577,22362261-22362722,22362853-22364415
Length = 1234
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 404 STFTFVGVSGGRAAPGSIEVERLASLAISTGGVVLAVAGQL 282
ST ++ GG AA GS+ ER+ L I GG+ + G++
Sbjct: 811 STVSYEFFHGGSAAAGSVAGERVTVLTIDGGGIRGIIPGKV 851
>08_02_1230 +
25419533-25420446,25421098-25421279,25422197-25422543,
25423327-25423557,25423680-25423775,25423934-25424044
Length = 626
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -1
Query: 392 FVGVSGGRAAPGSIEVERLASLAISTGGVVLAVA--GQLHYSTSAGALSFLHRDAARRVP 219
+V + G A P ++ +R +T G ++A G + S GA+S + RD R P
Sbjct: 214 YVQLPVGIAGPLLLDGQRFYVPMATTEGCLVASTNRGCKAIAESGGAVSVVLRDGMTRAP 273
Query: 218 VALAPTS 198
VA PT+
Sbjct: 274 VARLPTA 280
>07_03_0951 - 22836167-22836358,22836455-22837213
Length = 316
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 122 RRRRDRFEEAGGSWHTALRGI 184
RRRR+ +E A GS HT++R +
Sbjct: 79 RRRRESWESAAGSRHTSIRSV 99
>01_06_0560 +
30244814-30244871,30244979-30245140,30245725-30245786,
30246170-30246214,30246358-30246363,30246424-30246624,
30246735-30248024
Length = 607
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 65 GLGDRDRRESRV*SLAHGQRRRRDRFEEAGGSWHTAL 175
GLGD++ R V A + + +E A G+WHTA+
Sbjct: 271 GLGDKESRSRPVLISAFSEGSSWEVYEIACGTWHTAV 307
>06_03_0002 - 15280292-15281550,15282714-15282840
Length = 461
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -2
Query: 400 PLHSLASRAVARPQGRSKWNGLHLSQSRPAVLCLQSQASCTTPPALEPSP 251
P HSL + R + L P +L +Q + + TTP A PSP
Sbjct: 47 PSHSLIGDRPKQTVSRGRNPHRSLRSPNPRLLMVQEEPNITTPDAGHPSP 96
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 71 GDRDRRESRV*SLAHGQRRRRDRFEEAGGS 160
G++ RR+ R AHG R RD + + GS
Sbjct: 415 GEQRRRDERYRERAHGHRSHRDHHQSSRGS 444
>04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412
Length = 184
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/53 (30%), Positives = 20/53 (37%)
Frame = -3
Query: 309 CCACSRRPVALLHQRWSPLLPSSGCSATRARCTCTDLRRRNQIPRSAVCQEPP 151
CC C +P +P P+ GC A + C C P VC E P
Sbjct: 127 CCDCHPKPPPPAP---APAKPACGCPAWSSPCHCYPPPAMPPYPPVLVCDEGP 176
>04_04_1400 -
33259716-33260069,33260172-33260219,33260471-33260596,
33260850-33260900,33260963-33261055,33261217-33261272,
33261465-33261522,33262306-33262365,33262513-33262623,
33263368-33263949,33264026-33264097
Length = 536
Score = 27.9 bits (59), Expect = 6.1
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = -2
Query: 421 HAANITVPLHSLASRAVARPQGRSKWNGLHLSQSRPAVLCLQSQASCTTPPALEPSPSFI 242
H A+ P+ A+ ++ + S LH S S A L + PP + P PS +
Sbjct: 17 HQASPPPPIDQQAAESLGKSPSASDLTALHASSSSSAADALLDAPTRRQPP-VAPPPS-L 74
Query: 241 GMQRDACPLHLHRPP 197
G++ A +L PP
Sbjct: 75 GLRLAARRPNLPPPP 89
>02_05_0505 -
29605860-29606102,29606331-29606677,29607291-29607472,
29609540-29610282
Length = 504
Score = 27.9 bits (59), Expect = 6.1
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 389 VGVSGGRAAPGSIEVERLASLAISTGGVVLAV-AGQLHYSTSAGALSFLHRDAARRVPVA 213
VGV+G G E +A + G +V +V G S S GA S L RDA R P
Sbjct: 162 VGVAGPLLLDGR---EYHVPMATTEGCLVASVNRGCRAISASGGAFSVLLRDAMSRAPAV 218
Query: 212 LAPTS 198
P++
Sbjct: 219 KLPSA 223
>02_02_0221 +
8006708-8006950,8007049-8007252,8007559-8007750,
8007860-8008098,8009756-8009851,8009966-8010058,
8011481-8011561,8012432-8012518,8012904-8013033,
8013223-8013528,8013749-8013772,8014162-8014240,
8014572-8014708,8015427-8015477
Length = 653
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = -3
Query: 324 NLDRRCCACSRRPVALLHQRWSPLLPSSGCSATRARCTCTDLRRRNQIPRSAVCQEPPAS 145
N+ C SRR V HQR + P S TR R D + + + AV + AS
Sbjct: 332 NVANSFCGRSRRKVVEEHQRTASSSPEHPLSRTRGRSMLGDRQHGDGV---AVSRSDGAS 388
Query: 144 SNLSRRLR 121
++ RR R
Sbjct: 389 TSNMRRGR 396
>08_02_0769 - 21012521-21013331,21013692-21013821,21013915-21014047
Length = 357
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = -2
Query: 439 NYSAYRHAANITVPLHSLASRAVARPQGRSKW---NGLHLSQSRPAVLCLQSQASCTTPP 269
N +A +A +T L +A AR + ++ + + ++ S P+ L QS T PP
Sbjct: 134 NNTAGDKSAKVTASLSHMAQWESARLEAEARLARESKMRIAASTPSKLHAQS----TNPP 189
Query: 268 ALEPSPSF 245
A PSP F
Sbjct: 190 ASTPSPCF 197
>03_05_0924 + 28861561-28861692,28861970-28862262,28862841-28863657
Length = 413
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -3
Query: 378 GRSRGPRVDRSGTACISRNLDRRCCACSRRPVALLHQRWSPLLPSS 241
G + P R G A + + L R+ C RR V + WSP P S
Sbjct: 28 GATSLPFARRRGVAAV-KGLGRQQLTCRRRGVVVRAASWSPSGPES 72
>03_02_0858 +
11848128-11848287,11848906-11848973,11849281-11849403,
11850796-11851128,11851199-11851321,11851414-11851632
Length = 341
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 69 WVTATDVRVVFNRLHMVNEGDEIDLKKQAAP 161
W + D F+R+HM+N D I ++A P
Sbjct: 134 WTESEDTGDGFHRIHMINNADYIFDAEEAVP 164
>02_04_0566 - 23912651-23913862
Length = 403
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 370 ARPQGRSKWNGLHLSQSRPAVL 305
ARP+ R W+G+HL+Q +V+
Sbjct: 362 ARPEERISWDGVHLTQRAYSVM 383
>01_07_0196 + 41910225-41910363,41910650-41911218
Length = 235
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -1
Query: 389 VGVSGGRAAPGSIEVERLASLAISTGGVVLAVAGQLHYSTSAG 261
VG AAP S RL + + GGV + G LHY S G
Sbjct: 138 VGFVVATAAPAS---SRLITRVVPKGGVFVFPRGLLHYERSVG 177
>01_01_0287 -
2371323-2371482,2371582-2371988,2372526-2372552,
2372854-2373066
Length = 268
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 436 YSAYRHAANITVPLHSLASRAVARPQGRS 350
++A R AA T+PL + A ARPQ RS
Sbjct: 4 FAAARRAATSTLPLLRPLAAAAARPQPRS 32
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,938,910
Number of Sequences: 37544
Number of extensions: 391063
Number of successful extensions: 1630
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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