Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0938
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 465  VKYYKANRKIIVLTDTQRISQYLYIRWRLGRSRGPRVD 352
            V+  K N ++  L DT++++  L   W +   R  +VD
Sbjct: 1083 VETAKTNEEMWELIDTEKLTDRLPYPWTMDNERYVKVD 1120


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 331 LSQSRPAVLCLQSQASCTTPPALEPSP--SFIGMQRDACPLHLHRPP 197
           ++Q +  ++  QSQ   +  P  +PSP  S    QR + P     PP
Sbjct: 1   MTQQKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPP 47


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +3

Query: 198 GGRCKCNGHASRCIPMKEGEGSSAGG 275
           GG+   N    +C+    G G+S  G
Sbjct: 579 GGKTSPNSAVRKCMSPINGSGASGSG 604


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/40 (22%), Positives = 17/40 (42%)
 Frame = +3

Query: 123 EGDEIDLKKQAAPGTQHYAVSDFAVGGRCKCNGHASRCIP 242
           E ++ +  +    G ++YA S     G  +   H  +C P
Sbjct: 773 EAEKREKSEHCEKGKEYYAASFHTDIGNSQSLAHQDQCCP 812


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,660
Number of Sequences: 438
Number of extensions: 3757
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)