Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0937
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38360.2 68417.m05424 expressed protein contains Pfam profile...    31   0.52 
At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein, A...    28   3.7  
At3g13784.1 68416.m01741 beta-fructosidase, putative / beta-fruc...    28   4.9  
At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative sim...    27   8.5  
At5g66120.1 68418.m08329 3-dehydroquinate synthase, putative sim...    27   8.5  
At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase, p...    27   8.5  

>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 485

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 310 DNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGIT 182
           D+C   SP+RR   G+  PL  G  +DS      + R   G T
Sbjct: 415 DSCMSSSPSRRVIRGIDDPLLNGSFSDSGVTRTKKHRRKSGYT 457


>At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845 contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 375

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 340 ALTRNSSFMGDNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGI 185
           AL +  SF GDN  PQS   +++   P     G H       + +PR   G+
Sbjct: 141 ALLKMKSFDGDNSNPQSSWSKTYK--PTSSNGGHHFAVVRTTKGKPRRYNGV 190


>At3g13784.1 68416.m01741 beta-fructosidase, putative /
           beta-fructofuranosidase, putative / cell wall invertase,
           putative similar to beta-fructofuranosidase GI:402740
           from [Arabidopsis thaliana]
          Length = 569

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 179 VCDALRCPGPHARYTEGISMFSL--A*RPGQPAETPSCWGLGFAIIPHKRGI 328
           V D  +    HA  T+ I+  +L  A RP +P++   CW     I+P+ + +
Sbjct: 77  VMDVNKTVWGHATSTDLINWITLSPAIRPSRPSDINGCWSGSVTILPNGKPV 128


>At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative
           similar to aroB [Neisseria gonorrhoeae][GI:2661441];
           contains 3-dehydroquinate synthase domain PF01761
          Length = 442

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 483 SLVNFPTTPTAVKPPRVGPKTSLNHSIGSS 394
           + +  PTT  A     VG KT +NH +G +
Sbjct: 202 NFIQIPTTVMAQVDSSVGGKTGINHRLGKN 231


>At5g66120.1 68418.m08329 3-dehydroquinate synthase, putative
           similar to aroB [Neisseria gonorrhoeae][GI:2661441];
           contains 3-dehydroquinate synthase domain PF01761
          Length = 338

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 483 SLVNFPTTPTAVKPPRVGPKTSLNHSIGSS 394
           + +  PTT  A     VG KT +NH +G +
Sbjct: 98  NFIQIPTTVMAQVDSSVGGKTGINHRLGKN 127


>At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide acetyltransferase
           (E2) subunit of PDC [Arabidopsis thaliana] GI:559395;
           contains Pfam profiles PF00198: 2-oxo acid
           dehydrogenases acyltransferase (catalytic domain),
           PF00364: Biotin-requiring enzyme, PF02817: e3 binding
           domain; supporting cDNA
           gi|5881964|gb|AF066080.1|AF066080
          Length = 637

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +2

Query: 395 LLPIE*FSEVFGPTRGGFTAVG----VVGKLTKLDHLEEVKVVTR 517
           + P++ F  +  P + G  AVG    VV  +  LD +E+  VVT+
Sbjct: 557 MYPVDNFCAIINPPQAGILAVGRGNKVVEPVIGLDGIEKPSVVTK 601


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,903,134
Number of Sequences: 28952
Number of extensions: 243261
Number of successful extensions: 546
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)