Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0936
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 94 2e-20
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 33 0.032
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 32 0.098
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 30 0.30
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 30 0.40
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.52
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 29 0.91
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 28 1.2
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 28 1.6
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit... 27 2.8
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 27 2.8
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 27 3.7
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 4.9
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch... 26 4.9
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 26 4.9
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 26 4.9
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 4.9
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 26 6.4
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 26 6.4
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 6.4
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 26 6.4
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch... 26 6.4
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 6.4
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 26 6.4
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 6.4
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 6.4
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 6.4
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 25 8.5
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 93.9 bits (223), Expect = 2e-20
Identities = 66/192 (34%), Positives = 104/192 (54%), Gaps = 5/192 (2%)
Frame = +3
Query: 48 MPKSIKHLIVDTSAFIRAANL-QDIAENVYTIQEVIDEITNDRQRKKLVVLPYDLKVKDV 224
M KSI HL++DT I ++ L ++ AE+ YTI VI EI ++ RK + + +
Sbjct: 1 MSKSITHLVLDTGGIICSSTLLRNSAESFYTIPRVIAEIRDETSRKNFELWGDQVIQRVP 60
Query: 225 FADNIKFITEFSKKTGDYSSLSATDIKVMALTYQLEKEKVGGTEHLKDEPTMQKSVKVTG 404
+ IK ++EF+K+TGDYSSLS TDI+++ALTY+LE E GG L+ P QK +
Sbjct: 61 KPEFIKKVSEFAKQTGDYSSLSVTDIQILALTYELEVEFNGGDWRLRKYPG-QKHINGKP 119
Query: 405 LAGFNLHPNYENANQETGEKDSNANNNKETSEP--LQQPI--GETVNVETGESFEVKHQQ 572
+ N + E+A++ T D+ + E S+P + + GET + ++
Sbjct: 120 PSNSN---STEDASKPT-SSDTASVKETENSDPKSAENEVLEGETTQHSNNKEAHPNTEE 175
Query: 573 NCQTTTNETDDD 608
N + NE DD+
Sbjct: 176 NKEQEDNEEDDE 187
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 33.5 bits (73), Expect = 0.032
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +3
Query: 435 ENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDDDKL 614
E + E +KD ++ KET + +++ + +V+ E+ ++ + T ++ DK+
Sbjct: 462 ETDSIEANDKDEKTDS-KETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKV 520
Query: 615 AEEISKQINDMDLKDD 662
+ SK N+ KDD
Sbjct: 521 EQTDSKDTNEKPAKDD 536
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +3
Query: 435 ENANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNET---DD 605
E+ +ET K+++ + S + +T + ET + E Q TNE DD
Sbjct: 481 EDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVE----QTDSKDTNEKPAKDD 536
Query: 606 DKLAEEISKQINDMDLKDDKVDE 674
+K A E +++++ D+K +K++E
Sbjct: 537 NKEANEKAEKVDSKDVK-EKIEE 558
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 31.9 bits (69), Expect = 0.098
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -1
Query: 353 RTANLLLL*LVGQCHNLNICSREARIITCFLREFSNEFYVICEDILDF*VVWKDNEL 183
+ ANLL L + + ++ + +T + + N FYV+CE+ +D + KD EL
Sbjct: 713 KLANLLELPHLAEVLPFSVSRQPLLSLTNDILQLYNNFYVLCEETMDTVIKLKDGEL 769
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 30.3 bits (65), Expect = 0.30
Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
Frame = +3
Query: 303 KVMALTYQLEKEKVGGTEHLKDEPTMQKSVKVTGLAGFNLHPNYENANQETGEKDSNANN 482
KV LT+QL E + +K N+H N++ E + +S +
Sbjct: 225 KVNELTHQLNMADSKYNESKVANNSQNNQIKTLKAQNLNIHKNFQKIQSELIQTNSGLYS 284
Query: 483 NKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDDD--KLAEEISKQINDMDLK 656
K+ LQ + T ++ +++ + ++E ++ +LA E + N +
Sbjct: 285 TKKELSALQVRYATLLRKFTDQTKKIEELSLAASRSSENENTIRRLALENHELKNSNNQL 344
Query: 657 DDKVDEL 677
++ +D+L
Sbjct: 345 NNHIDDL 351
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 29.9 bits (64), Expect = 0.40
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Frame = +3
Query: 417 NLHPNYE-NANQET--GEK-DSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQ- 581
N+ PN N QE G K +NN ++ ++ + +P NV FEV++ +N
Sbjct: 139 NMQPNVSWNVLQEPTRGIKVPKESNNTQQNNQFVMEPSQNKGNVNDANFFEVEYARNENM 198
Query: 582 ---TTTNETDDDKLAEEISKQINDMDLKDDKVDEL 677
+++ DD L +EI K ++ + K +E+
Sbjct: 199 NKLSSSELISDDLLEDEIMKPLSSGESLPKKEEEV 233
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.5 bits (63), Expect = 0.52
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Frame = +3
Query: 360 LKDEPTMQKSVKVTGLAGFNLHPNY----ENANQETGEKDSNANNNKETSEPLQQPIGET 527
L P Q V++ G + ++ + +QE E D K+ S L++ GE+
Sbjct: 409 LPTAPVQQSKVQINGTSAYSTATDAVTKDAEESQEDVEMDIVIEKKKKKSSKLKEADGES 468
Query: 528 VNVETGESFEVKHQQNCQTTTNETDDDKLAEEISKQINDMD 650
E E + KH+++ + + E++D + ++ K D
Sbjct: 469 SKKEKKEKKDKKHKKS-KRKSEESEDGESPKKKKKSKKSKD 508
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 28.7 bits (61), Expect = 0.91
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Frame = +3
Query: 330 EKEKVGGTEHLKDEPTMQKSVKVTGLAGFNLHPNYENAN--QETGEKDSNANNNKETSEP 503
+KE + E +K EP Q K A P E A QE GE++ +E ++P
Sbjct: 91 KKETIQPPEEVKTEPP-QPEEKEGKEAKEPEEPPKEEAEEPQEGGEEEEEEEEEEEITDP 149
Query: 504 LQQPIGETVNVETGESFEVKHQ-QNCQT-TTNETDDDKLAEEISKQINDM-----DLKDD 662
L++ E ++ + EVKH + C T + + +E+ ++ + D D
Sbjct: 150 LEKMTQEC--MDAPDCKEVKHHFEECTARVTKKVEQGDKSEDCIEEFFHLYHCARDCADP 207
Query: 663 KVDELMV 683
KV +++V
Sbjct: 208 KVFKVLV 214
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 426 PNYENANQETGEKDSNANNNKETSEPLQQP-IGETVNVETGESFEVKHQQNCQTTTNETD 602
P+ E+ E+ E D + + E ++ I V TGE+ +++ E D
Sbjct: 296 PSEEDEESESPELDELLELDYQIGEDFKEKLIPRAVEWFTGEALALENYDGFSDLDVEED 355
Query: 603 DDKLAEEISKQINDMDLKD 659
+D + +++++D D +D
Sbjct: 356 EDDVESSSNEEVSDSDEED 374
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +3
Query: 447 QETGE--KDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDD-DKLA 617
Q+TGE KD+N + +K P + + +ET +S H + + + + +
Sbjct: 294 QDTGESNKDNNTSTSKHKKRPKRLSKFKQAKLETKKSGNKDHATSSEKLSLGNESIHSIN 353
Query: 618 EEISKQINDMDLKDDKVDE 674
E S I + D D+K+ E
Sbjct: 354 ETRSSSIEEPDNADNKIVE 372
>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 501 PLQQPIGETVNVETGESFEVKHQQNCQTTTNETDDDKLAEEISKQI 638
P+Q P E + + E E K +++ + E DD L +E K++
Sbjct: 70 PVQGPPTEELIIPPEEMLETKEEESLKHAREENDDLHLDKETKKRL 115
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +3
Query: 438 NANQETGEKDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDD 605
++N+ + E SN++++ + + G+ E GE+F +KH + + DD
Sbjct: 74 SSNEPSPESSSNSDSSSSDDSSVDRLAGDPF--ELGENFNLKHYLRAYKDSLQRDD 127
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 243 FITEFSKKTGDYSSLSATDIKVMALTYQLEKEKVGGTEHLKDEPTMQKSVKVTGLA 410
FIT F + D+ + +K+ L ++ E +GG+ K Q++ K+ LA
Sbjct: 1219 FITRFDRGHSDFQFDTERVLKIYRLFFEAEMTSLGGSAEEKYSWLEQQNSKLKELA 1274
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 500 FTGLFVIVCIRVFLTCFLIGIF 435
FTG V+ I +F T F +GIF
Sbjct: 584 FTGWVVVGLIWIFFTVFAVGIF 605
>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 143 LYSINIFSNVLKVCRP 96
L ++ IFSN +KVCRP
Sbjct: 213 LPNLRIFSNFIKVCRP 228
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -1
Query: 485 VIVCIRVFLTCFLIGIFIIGMKVKPSQSCNFNRFLHSR 372
++ IR+++ F I I G+ S+S +F+R++H +
Sbjct: 941 IVAVIRIWMYSFGIFCLIAGVYYILSESSSFDRWMHGK 978
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = -1
Query: 200 WKDNELFSLPIISYFINNLLYSINIFSNVLKVCRPYECRGIHNQMLDRLRHC 45
WK ++ + + N+++ + LK+ +PY GI +LD HC
Sbjct: 228 WKHGPIYCSEVTGNLLINVMHVDEQYVKRLKLNQPYNIMGITVYVLD-ANHC 278
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 26.2 bits (55), Expect = 4.9
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 5/154 (3%)
Frame = +3
Query: 84 SAFIRAANLQDIAENVYTIQEVIDEITNDRQRKKLVVLPYDL---KVKDVFADNIKFITE 254
S +R AN + + + + IQ E T + RK V+ +DL +K V AD+ T+
Sbjct: 1122 SNMLRRANQKRMLDKI-VIQG--GEFTTEWFRKADVLDLFDLDDESLKKVKADSDSGSTK 1178
Query: 255 FSKKTGDYSSLSATDIKVMALTYQLEKEKVGGTEHLKDEPTMQKSVKV--TGLAGFNLHP 428
+++ + + +A D + + KE + T Q + T L+ + P
Sbjct: 1179 -NEENWEVALAAAEDEEDVQAAQVARKESALEQTEFSETSTPQAMLTKDSTPLSSDSATP 1237
Query: 429 NYENANQETGEKDSNANNNKETSEPLQQPIGETV 530
+E +++ E+ SN N+ E L++ + ETV
Sbjct: 1238 GFE---RDSTEEQSNTNDMDEDRSELEEDLDETV 1268
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 556 SNDSPVSTFTVSPMGCC 506
SN S STFT++P G C
Sbjct: 4 SNGSKSSTFTIAPSGSC 20
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 6.4
Identities = 24/87 (27%), Positives = 36/87 (41%)
Frame = +3
Query: 312 ALTYQLEKEKVGGTEHLKDEPTMQKSVKVTGLAGFNLHPNYENANQETGEKDSNANNNKE 491
AL Y + K K E D+ K V+ +L+ E +D N N N E
Sbjct: 22 ALLYLMNKNKKRKPEKKDDKEKSSKKVQKKNKVIESLN------EMEVEMEDENENENDE 75
Query: 492 TSEPLQQPIGETVNVETGESFEVKHQQ 572
Q+ I +NVE+ ++ E HQ+
Sbjct: 76 -----QEAIQYYINVESQDADETLHQE 97
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/63 (22%), Positives = 31/63 (49%)
Frame = +3
Query: 477 NNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDDDKLAEEISKQINDMDLK 656
N + E L + E++ + S ++ + + + + +++K E I ++ + DLK
Sbjct: 46 NEDDENGMDLGRVASESLEGDAVVSIDINTEDSSLSPAKQ-ENEKSPEGIEQKYQEEDLK 104
Query: 657 DDK 665
DDK
Sbjct: 105 DDK 107
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 357 HLKDEPTMQKSVKVTGLAGFNLHPNYENANQETGEKDSNANNNKETSEPLQQ 512
+LKDE +S++ + GF PN+ N N++ + AN + T+E +Q+
Sbjct: 73 YLKDET---ESIQ-SPFEGFTAQPNFSNFNKQGNTMNREANFQR-TNEKIQR 119
>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 237
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 14 CKVNIVISVQRNAEVYQ-ASDCGYLCIHKGGKPSRH 118
C+ V++V +YQ S CG+ IH+ KP RH
Sbjct: 84 CRGCQVLNVYFGGSLYQNVSSCGFRDIHRPSKP-RH 118
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 131 NIFSNVLKVCRPYECRGIHNQMLDRLRHCA 42
+++ VL V PY C GI + ++D ++ A
Sbjct: 441 SLYVTVLCVLAPYRCLGIGSLLIDHVKKTA 470
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Frame = +3
Query: 447 QETGEKDSNANNNKETSEPLQQPIGE------TVNVETGESFEVKHQ-QNCQ-TTTNETD 602
+ E+++ ++ KET+ P++QP T T F ++H Q C T E
Sbjct: 128 RRAAERENKNSSVKETAAPIKQPKNANSSSTCTRTPPTSGRFSIRHDGQVCNITIAAEET 187
Query: 603 DDKLAEEISKQIN 641
+LA+++++++N
Sbjct: 188 LRQLAQQVAEKMN 200
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +3
Query: 462 KDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDDDKLA 617
K+ +N++ S E N ++ + N TN DDDKLA
Sbjct: 506 KEGGSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTDDDDKLA 557
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 336 EKVGGTEHLKDEPTMQKSVKVTGLAGFNLHPNYENANQETGEKDSNANNNKETS 497
E + G + E S ++ +A F+ + +N N ++DSN NNN +
Sbjct: 496 EAMCGATVERKEGGSNSSSNISNVANFDSAED-DNDNDNDNDRDSNNNNNNNNT 548
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +3
Query: 462 KDSNANNNKETSEPLQQPIGETVNVETGESFEVKHQQNCQTTTNETDDDKLA 617
K+ +N++ S E N ++ + N TN DDDKLA
Sbjct: 506 KEGGSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTDDDDKLA 557
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 336 EKVGGTEHLKDEPTMQKSVKVTGLAGFNLHPNYENANQETGEKDSNANNNKETS 497
E + G + E S ++ +A F+ + +N N ++DSN NNN +
Sbjct: 496 EAMCGATVERKEGGSNSSSNISNVANFDSAED-DNDNDNDNDRDSNNNNNNNNT 548
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.8 bits (54), Expect = 6.4
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 303 KVMALTYQLEKE--KVGGTEHLKDEPTMQKSVKVTGLAGFNLHPNYENANQETGEKDSNA 476
K+ L QL+KE KVG L + T +SV L G + HP++E + K +
Sbjct: 1221 KISDLLNQLQKERCKVG----LLKQKTENRSVTQHTLDGNSPHPSFEEKHSGDPLKRIDG 1276
Query: 477 NNN 485
NN+
Sbjct: 1277 NND 1279
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 108 LQDIAENVYTIQEVIDEITNDRQRKKLVVLPYD-LKVKDV 224
L + + +YTI + +D R+ L+VLP +KV ++
Sbjct: 229 LSRVCKGIYTIPSFVSSSASDLIRQMLMVLPTSRIKVAEI 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,381
Number of Sequences: 5004
Number of extensions: 58486
Number of successful extensions: 260
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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