Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0932
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.0  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.0  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   4.6  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   8.1  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   8.1  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 571 SYSQIGYGSNYAPPRRPLRPTRG 639
           SYSQ  Y     PP+ P  P+RG
Sbjct: 96  SYSQPSYSQPSQPPKEPALPSRG 118


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 283 VGSTMPLTSHLHGGSVGMSWHKGKT 209
           +G T+  T H  GG++ + W +G T
Sbjct: 60  LGKTLASTIHHKGGNLSLQWQRGNT 84


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 574 YSQIGYGSNYAPPRRPLRPTRG 639
           YS+ GY     PPR  L P++G
Sbjct: 898 YSRGGYSRGSVPPRETLAPSKG 919


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 338 EYQSAFNFVLSKCPHLDLFTY 400
           E + A   VL  CP+ DLFTY
Sbjct: 86  ETEDAIYVVLQYCPNGDLFTY 106


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -1

Query: 691 WVCNVSAQQLCFFVIIERRESA*GAYEGGHSYYR--IRFEST 572
           WVCNV  +    F ++ +          G+ Y R  +RF+ST
Sbjct: 142 WVCNVDPRNCLVFDLVNKGYDVWLGNNRGNKYSRQHLRFDST 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,099
Number of Sequences: 5004
Number of extensions: 58045
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)