Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0932
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    29   0.033
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.7  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.7  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 29.5 bits (63), Expect = 0.033
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 417 KINNYE*VNKSRCGHLLNTKLNAD*YSLREHQ 322
           K++  E  +K++C H L+ K +   YSL +HQ
Sbjct: 562 KLSTIEDADKNQCRHYLDAKSSVQNYSLAKHQ 593


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 50  TLRQQLSATVIDFFYC 3
           T+ + LSA VI FF C
Sbjct: 257 TITRMLSAVVITFFIC 272


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 425 INYSITESLIKQLRKQTPCVP 487
           INY I ++ +K+  K T C P
Sbjct: 517 INYRIFKANVKEAVKDTXCDP 537


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 214 KTAFEDSQESQR*PVKPGRQLHDT 143
           KT   +  E  R PV+P    +DT
Sbjct: 325 KTPMRNDSERNRSPVRPATVQYDT 348


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 256 HLHGGSVGMSWHKGKTAFEDSQE 188
           H  GGS G   ++G+T F +  +
Sbjct: 86  HGKGGSRGRGGNRGRTGFNNKNK 108


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 508 SLTQLSWANTCMNP 549
           +LT L W N+ +NP
Sbjct: 343 ALTWLGWINSAINP 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,934
Number of Sequences: 438
Number of extensions: 3961
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)