Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0932
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42620.1 68418.m05188 expressed protein                             29   2.3  
At3g21660.1 68416.m02731 UBX domain-containing protein contains ...    28   5.3  
At3g44300.1 68416.m04757 nitrilase 2 (NIT2) identical to SP|P329...    28   7.0  

>At5g42620.1 68418.m05188 expressed protein
          Length = 841

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = +3

Query: 114 SCEWDNKHHRVSCNCLPGFTGHLC--DSCESSNAVFPLCHDIPTEPPCKCD--VRGIVDP 281
           SC ++       C CL G+ GH C   SC ++      C    T+  C C+    GI   
Sbjct: 606 SCNFNGDCVDGKCRCLLGYHGHDCRNRSCPNNCNGHGKC---TTQGVCICENGFTGIDCS 662

Query: 282 TRECDEVC 305
           T  CDE C
Sbjct: 663 TAICDEQC 670


>At3g21660.1 68416.m02731 UBX domain-containing protein contains
           Pfam profile: PF00789 UBX domain
          Length = 435

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 544 NPKVLLPLSSYSQIGYGSNYAPPRRPLRP 630
           N ++ +P SS+S     S Y+P R  LRP
Sbjct: 42  NLRIKIPTSSFSTFDGSSGYSPSRLQLRP 70


>At3g44300.1 68416.m04757 nitrilase 2 (NIT2) identical to SP|P32962
           Nitrilase 2 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 339

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 115 PANGTTSITEYRATVFLASPVTSATPAS 198
           P NG  S T  RAT+  AS V + TPA+
Sbjct: 8   PFNGVASSTIVRATIVQASTVYNDTPAT 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,246,890
Number of Sequences: 28952
Number of extensions: 309641
Number of successful extensions: 776
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)