Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0931
         (741 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D83701-1|BAA12067.1|  540|Drosophila melanogaster photolyase pro...    29   5.0  
AY089584-1|AAL90322.1|  540|Drosophila melanogaster RE11660p pro...    29   5.0  
AE014134-3257|AAF53904.1|  540|Drosophila melanogaster CG2488-PB...    29   5.0  
AE014134-3256|AAN11080.1|  540|Drosophila melanogaster CG2488-PA...    29   5.0  

>D83701-1|BAA12067.1|  540|Drosophila melanogaster photolyase
           protein.
          Length = 540

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -1

Query: 492 LGKAVESVYDNLWISLFSKPQPMPTA--KYGKVLDDILDSNCLFIYLLNLK 346
           L +  ES+ D +W++ F KP   P +      VL   L   CL   L N K
Sbjct: 228 LRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQK 278


>AY089584-1|AAL90322.1|  540|Drosophila melanogaster RE11660p
           protein.
          Length = 540

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -1

Query: 492 LGKAVESVYDNLWISLFSKPQPMPTA--KYGKVLDDILDSNCLFIYLLNLK 346
           L +  ES+ D +W++ F KP   P +      VL   L   CL   L N K
Sbjct: 228 LRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQK 278


>AE014134-3257|AAF53904.1|  540|Drosophila melanogaster CG2488-PB,
           isoform B protein.
          Length = 540

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -1

Query: 492 LGKAVESVYDNLWISLFSKPQPMPTA--KYGKVLDDILDSNCLFIYLLNLK 346
           L +  ES+ D +W++ F KP   P +      VL   L   CL   L N K
Sbjct: 228 LRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQK 278


>AE014134-3256|AAN11080.1|  540|Drosophila melanogaster CG2488-PA,
           isoform A protein.
          Length = 540

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -1

Query: 492 LGKAVESVYDNLWISLFSKPQPMPTA--KYGKVLDDILDSNCLFIYLLNLK 346
           L +  ES+ D +W++ F KP   P +      VL   L   CL   L N K
Sbjct: 228 LRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQK 278


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,041,010
Number of Sequences: 53049
Number of extensions: 479797
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)