Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0931
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   7.0  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   7.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 489 GKAVESVYDNLWISLFSKPQ 430
           G A ++ YDN+ + L +KP+
Sbjct: 322 GVAKDAAYDNIVLKLLTKPR 341


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 283 LGKHMLFRVTLKNIDIT*SLILIIKSRLHSSNKHTNSLGP 164
           LGK++LF + L  + +   +I I+   +H     T+ + P
Sbjct: 298 LGKYLLFTMILVGLSV---VITIVILNVHYRKPSTHKMAP 334


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 77  LIKNELAFIFCSDN*MLHFCFNA 145
           LIKNE   I  S    L FC NA
Sbjct: 152 LIKNERICILKSITCALQFCHNA 174


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 7   HSQELVYR*LKLSKILIN 60
           H + +VYR LKL  +L++
Sbjct: 102 HGRGIVYRDLKLDNVLLD 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,931
Number of Sequences: 438
Number of extensions: 3647
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)