Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0929
         (780 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YNT1 Cluster: Putative uncharacterized protein; n=4; ...    34   4.6  
UniRef50_Q1E5Q0 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_Q4YNT1 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 1319

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 285 NRFLLHAYEYIYIRYIHQNNIFYN 356
           N ++L  Y+YIY +YI   NIFYN
Sbjct: 138 NDYILQIYKYIYNKYIECENIFYN 161


>UniRef50_Q1E5Q0 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 76

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 343 LFWCMYRMYIYSYACSKKRLFQYYKQTLQFYL 248
           L +C +R Y Y Y C K ++   Y     FYL
Sbjct: 34  LKYCYFRYYNYDYICKKNKIISLYMSVYLFYL 65


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,853,314
Number of Sequences: 1657284
Number of extensions: 11674380
Number of successful extensions: 30672
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30651
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)