Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0928
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    27   2.2  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   3.8  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    27   3.8  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    26   5.0  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   5.0  
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch...    26   6.6  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   6.6  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   8.7  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    25   8.7  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.7  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   8.7  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.7  

>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 312 IRC-FNQYFSEAVSRTVIRLHLINFHIYILFKYIP 413
           IRC   + F +++S+ +I  H I+FH  ++   +P
Sbjct: 67  IRCRLKKKFIKSLSKKIISYHFISFHTIVVLLLLP 101


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 312 IRCFNQYFSEAVSRTVIRLHLINFHIYILFKYIPVVVSDTIF 437
           I C+NQ   E +S T   LH +  H Y   + + ++  D +F
Sbjct: 772 ITCWNQRVDELLSDTRSHLHKLVQHHYFASRNLKLLYVDLLF 813


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 662 LEIIDYHNLCVLNSGSPTTRSRASSNVLDLSICSANLASSL 540
           LE++D+     L S   T +  A  ++L LS C+A L+ +L
Sbjct: 173 LEVLDHRLYTYLLSKGLTAKIYALPSILTLSACTAPLSEAL 213


>SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 733

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 38/196 (19%), Positives = 85/196 (43%), Gaps = 6/196 (3%)
 Frame = -3

Query: 587  NVLDLSICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQK-PRMKYSIRNNDW 411
            N LD+  C +++  +   + F+  +  +  P    +P +N+N + +  P +K+  +    
Sbjct: 550  NSLDIPNCFSDVGLTDQVAIFTPAVPKEDSPE--QIP-ENVNASEESYPNVKHISK---L 603

Query: 410  DVFKQNVDMKINQVQSDYCSADSFTKILIEAADESFPVKRVSKGKIPSPPWWDNECSEAI 231
             +   + D +    ++D   A+  TK++++       +  VS   +PS  + +N  S ++
Sbjct: 604  PLINDSSDNESGNQENDDAVANESTKVVVDNQQPQPKISTVSDTAVPSMSFANNISSRSV 663

Query: 230  KS----RKEAEMNYLAYTSSENFDLLSKSITETRKLFKKKKFDSWRKFCSEISPDIQPSA 63
             S     K +      + ++    +    +T T      KK    +K   + SP +   +
Sbjct: 664  ISAATDSKPSTRTSPPFVNNTKPIVAKSPVTVTASSETNKKS---QKINKKASPRV---S 717

Query: 62   VWQKIH-RFRSLYKES 18
            +W K+  +FRS  K+S
Sbjct: 718  LWTKLFGKFRSNKKKS 733


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 524 SSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNND 414
           SS L +    I IN    NINT T +P   Y + N+D
Sbjct: 427 SSVLTTAWNGIQINEDAVNINTGTVEPLHMYGVANHD 463


>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 207

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 116 DSWRKFCSEISPDIQPSAVWQKIHRFRSLYKESKS 12
           DSW + CS I    +    W K  ++ S+Y E  S
Sbjct: 53  DSWLRLCSNIESHDETDTEWSKNTQW-SMYLEGNS 86


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 152 TETRKLFKKKKFDSWRKFCSEISP 81
           T  +KL KK  FDS+R   S ISP
Sbjct: 193 TPAQKLRKKNNFDSFRISNSHISP 216


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 266 PPWWDNECSEAIKSRKEAEMNYLAYTSSENFDLLS 162
           PP++     +  ++  E ++NY +Y S  + DLLS
Sbjct: 395 PPFYSENPMKLYENILEGKVNYPSYFSPASIDLLS 429


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 173 DLLSKSITETRKLFKKKKFDSWRKFCSEISPDIQPSAVWQKIHRFRSLYKESK 15
           D LS     T +  K  ++ S      +   DI+P A+WQ+ +    L KE K
Sbjct: 276 DKLSPQQICTARFIKHAEWMSQVLLTLQSVKDIEPPALWQEPNSMEELGKELK 328


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -3

Query: 491 IINLPFKNINTNTQKPRMKYSIRNNDWDVFKQNVDMKINQVQSDYCSADSFTKILIE 321
           I+N  ++      + PR + SI   +  + K+N DM ++ V S Y    +  + L E
Sbjct: 166 ILNYSYRESCFKCRVPRNQASIAIGNHKISKRNGDMDVSDVPSVYLILRNLDRSLSE 222


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 359 YCSADSFTKILIEAADESFPVKRVSKGKI 273
           YC  DS +KI   A +  + + +V+KG++
Sbjct: 93  YCFNDSDSKIRYYACESMYNIGKVAKGEV 121


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -3

Query: 491 IINLP---FKNINTNTQKPRMKYSIRNND 414
           I+N P   F+NIN N   P   YS RN++
Sbjct: 538 ILNKPYVGFRNINANYTFPTTSYSRRNDE 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,591
Number of Sequences: 5004
Number of extensions: 55246
Number of successful extensions: 208
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)