Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0928
         (751 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013091-1|AAH13091.1|  315|Homo sapiens CLINT1 protein protein.       33   1.1  
AK092765-1|BAC03971.1|  625|Homo sapiens protein ( Homo sapiens ...    33   1.1  
BC025396-1|AAH25396.1|  538|Homo sapiens spermatogenesis associa...    32   2.5  
BC052303-1|AAH52303.1|  986|Homo sapiens ARHGAP4 protein protein.      31   4.4  

>BC013091-1|AAH13091.1|  315|Homo sapiens CLINT1 protein protein.
          Length = 315

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
 Frame = -3

Query: 728 GDFNCSHMSWGSP---SNNYYGSELLEIIDYHNLCVLNSGSPTTRSRASSNVLDL---SI 567
           GD++  + +   P   S  ++GS     ++  +      G P   S  SS++ DL   S 
Sbjct: 45  GDWSAFNQAPSGPVASSGEFFGSASQPAVELVSGSQSALGPPPAASN-SSDLFDLMGSSQ 103

Query: 566 CSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQNVD 387
            +   + S+N+S  S+       P+  + P +N++T  QKP   Y   N + D+ +++V 
Sbjct: 104 ATMTSSQSMNFSMMSTNTVGLGLPMSRSQPLQNVSTVLQKPNPLY---NQNTDMVQKSVS 160

Query: 386 MKINQVQSD 360
             +    SD
Sbjct: 161 KTLPSTWSD 169


>AK092765-1|BAC03971.1|  625|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35446 fis, clone SMINT2003644, weakly similar to
           Drosophila melanogaster epsin-like protein mRNA. ).
          Length = 625

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
 Frame = -3

Query: 728 GDFNCSHMSWGSP---SNNYYGSELLEIIDYHNLCVLNSGSPTTRSRASSNVLDL---SI 567
           GD++  + +   P   S  ++GS     ++  +      G P   S  SS++ DL   S 
Sbjct: 355 GDWSAFNQAPSGPVASSGEFFGSASQPAVELVSGSQSALGPPPAASN-SSDLFDLMGSSQ 413

Query: 566 CSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQNVD 387
            +   + S+N+S  S+       P+  + P +N++T  QKP   Y   N + D+ +++V 
Sbjct: 414 ATMTSSQSMNFSMMSTNTVGLGLPMSRSQPLQNVSTVLQKPNPLY---NQNTDMVQKSVS 470

Query: 386 MKINQVQSD 360
             +    SD
Sbjct: 471 KTLPSAWSD 479


>BC025396-1|AAH25396.1|  538|Homo sapiens spermatogenesis associated
           18 homolog (rat) protein.
          Length = 538

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -3

Query: 425 RNNDWDVFKQNVDMKINQVQSDYCS--ADSFTKILIEAADESFPVKRVSKGKIPSPPWWD 252
           +   W+  KQN D +  +  SDY     +   +I + +A++S    R S+ + PSP    
Sbjct: 207 KREQWNSLKQNADQQDTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSPSPAPRS 266

Query: 251 NECSEA 234
             CS +
Sbjct: 267 RSCSRS 272


>BC052303-1|AAH52303.1|  986|Homo sapiens ARHGAP4 protein protein.
          Length = 986

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 320 AADESFPVKRVSKGKIPSPPWWDNECSEAIKSRKEAEMNY-LAYTSSENFDLLS 162
           AA    PV  +  G +  PPWW   C+ +   R+   M + L  T + N  LLS
Sbjct: 236 AASSCAPVCWLQAGFLVHPPWWGAMCAPSTHQRQAKFMEHKLKCTKARNEYLLS 289


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,192,425
Number of Sequences: 237096
Number of extensions: 1741303
Number of successful extensions: 8030
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8020
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)