Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0928
(751 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 103 3e-22
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 95 7e-20
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 65 8e-11
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 54 2e-07
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 54 2e-07
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 54 3e-07
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 54 3e-07
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 53 4e-07
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 52 8e-07
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 52 8e-07
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 50 3e-06
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 50 3e-06
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 50 4e-06
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 50 4e-06
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 48 2e-05
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 46 6e-05
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 46 6e-05
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 46 6e-05
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 46 6e-05
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 44 3e-04
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 43 4e-04
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 38 0.019
AY075196-1|AAL68065.1| 608|Drosophila melanogaster AT13609p pro... 30 3.9
AE014134-1621|AAF52762.1| 602|Drosophila melanogaster CG17005-P... 30 3.9
L14644-1|AAB88625.1| 2895|Drosophila melanogaster hyperplastic d... 29 8.9
AE014297-3103|AAF55957.3| 733|Drosophila melanogaster CG5740-PA... 29 8.9
AE014297-1012|AAF54431.2| 2885|Drosophila melanogaster CG9484-PA... 29 8.9
AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA... 29 8.9
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 103 bits (246), Expect = 3e-22
Identities = 74/242 (30%), Positives = 112/242 (46%), Gaps = 6/242 (2%)
Frame = -3
Query: 737 LLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLCVLNSGSPTTRSRASS-NVLDLSICS 561
+L+GD N WGSP N G ++ +I ++L VLN GSPT S ++ +D+S+ S
Sbjct: 131 ILLGDLNSWSPLWGSPRTNTRGKKIETVILENSLIVLNDGSPTHLSTHNTFTHIDISLIS 190
Query: 560 ANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQNVDMK 381
+A +WS + GSDH+PI I++ NT P KY +W F ++ + K
Sbjct: 191 PQIAHMCSWSISDNLHGSDHFPITIHINTPTRPDNT-LPLPKYKTDQANWKRFNESCE-K 248
Query: 380 INQVQSDYC---SADSFTKILIEAADESFP-VKRV-SKGKIPSPPWWDNECSEAIKSRKE 216
+ C TK++ AA+ S P KRV K K+ PWW+ + ++
Sbjct: 249 SAAYWTVGCLNQQVAQMTKVIRSAANYSIPQTKRVIHKAKV---PWWNANLQQLRDQKQR 305
Query: 215 AEMNYLAYTSSENFDLLSKSITETRKLFKKKKFDSWRKFCSEISPDIQPSAVWQKIHRFR 36
+Y A T+ N K+ +K K +S KF S+ISP VW I R
Sbjct: 306 LFSSYKANTNDTNLIRYKKANALFKKAVLSAKRNSLEKFTSKISPVSSTKKVWSDIKRLA 365
Query: 35 SL 30
+
Sbjct: 366 GI 367
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 95.5 bits (227), Expect = 7e-20
Identities = 73/244 (29%), Positives = 108/244 (44%), Gaps = 6/244 (2%)
Frame = -3
Query: 743 PFLLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLCVLNSGSPTTRSRASSNV-LDLSI 567
P L+ GDFN H WGSP+ N G ID +L +LN SPT S ++ +DL++
Sbjct: 125 PSLITGDFNGWHHPWGSPTTNKRGKITHRFIDNMHLILLNDKSPTHFSTHNTYTHIDLTL 184
Query: 566 CSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQK-PRMKYSIRNNDWDVFK--- 399
CS LA W + GSDH+PII L F TN QK R + ++ +W+ F
Sbjct: 185 CSPILAPHAKWKILNDLHGSDHFPIITTL-FP--TTNPQKFYRPFFKLKEANWEQFNALT 241
Query: 398 QNVDMKINQVQSDYCSADSFTKILIEAADESFPVKRVSKGKIP-SPPWWDNECSEAIKSR 222
+ K + A +I++ +A+ S P + S P PWW+ + K +
Sbjct: 242 HQTNKKYPTSHNVNKEAALINRIILYSANLSIP--QTSPNTHPYRVPWWNKHLDQLRKEK 299
Query: 221 KEAEMNYLAYTSSENFDLLSKSITETRKLFKKKKFDSWRKFCSEISPDIQPSAVWQKIHR 42
+ A + +N + R KK+K ++ F S I P S +W I R
Sbjct: 300 QLAWKKLNRTITVDNILDYRRKNAIFRYELKKRKKEASSSFTSTIHPTTPSSKIWANIRR 359
Query: 41 FRSL 30
F L
Sbjct: 360 FCGL 363
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 65.3 bits (152), Expect = 8e-11
Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 12/235 (5%)
Frame = -3
Query: 746 QPFLLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLCVLNSG-SPTTRSRASSNVLDLS 570
+P ++ GD N WGS +N G +++ ++ +L +LN G PT + ++ +D++
Sbjct: 118 RPTVIGGDLNAWATEWGSRISNTRGRAVIDAMNLLDLVLLNDGFKPTFNNDRGTSFIDVT 177
Query: 569 ICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQNV 390
S L + NW SDH NL T P+ + WD+ K +
Sbjct: 178 FVSRVLVAGSNWMVHEDITLSDH-----NLITFGARTMRPSPKQRRCALGPVWDIRKLDE 232
Query: 389 DM---KINQVQSDYCSADSFTKILIE----AADESFPVKRVSKGKIPSPPWWDNEC---- 243
DM +I ++S A++ L++ D P KR +K K P WW +
Sbjct: 233 DMLAYQIEGMESIIGHAETMVTALMDRLRAMCDAVMPRKRNTKRK-PPVYWWSDSLHQLR 291
Query: 242 SEAIKSRKEAEMNYLAYTSSENFDLLSKSITETRKLFKKKKFDSWRKFCSEISPD 78
+E IK+R++A+ + S+ ++ TE + K ++++ + D
Sbjct: 292 TECIKARRQAQRSRGQPHHSQCIEVYKAKRTELKNGISAAKANAFKDLIDSVDDD 346
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 54.4 bits (125), Expect = 2e-07
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLC-VLNSGSPTT---RSRASSNVLDL 573
F+L GD+N H WG G+ L E + + ++ +G T +R + + +D
Sbjct: 110 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDF 169
Query: 572 SICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQN 393
SIC L + S+ L SDH PI++ + N QK + + ++FK
Sbjct: 170 SICKG-LGRLEKRISSSADLSSDHLPILLEINLDTSNLFLQKQNNNILKKTTNIELFKTV 228
Query: 392 VDMKI-----NQVQSDYCSA-DSFTKILIEAADESFPVKRV 288
++ KI +V D A + F K + ++ADES P R+
Sbjct: 229 LERKILLNTEIRVAEDINDAINIFIKNIKDSADESTPSPRI 269
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 54.4 bits (125), Expect = 2e-07
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLC-VLNSGSPTT---RSRASSNVLDL 573
F+L GD+N H WG G+ L E + + ++ +G T +R + + +D
Sbjct: 148 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDF 207
Query: 572 SICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQN 393
SIC L + S+ L SDH PI++ + N QK + + ++FK
Sbjct: 208 SICKG-LGRLEKRISSSADLSSDHLPILLEINLDTSNLFLQKQNNNILKKTTNIELFKTV 266
Query: 392 VDMKI-----NQVQSDYCSA-DSFTKILIEAADESFPVKRV 288
++ KI +V D A + F K + ++ADES P R+
Sbjct: 267 LERKILLNTEIRVAEDINDAINIFIKNIKDSADESTPSPRI 307
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 53.6 bits (123), Expect = 3e-07
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 15/174 (8%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLCVLNSGSPT---TRSRASSNVLDLS 570
FL+ GDFN H +W N +G L E+ D +L PT +A ++ LDL
Sbjct: 156 FLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPHNHKAKASTLDL- 214
Query: 569 ICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNN-DWDVFKQN 393
C N+ + L L SDH P++I +TN + Y I +W +FK+
Sbjct: 215 -CLTNIPNQLANPAVMQELSSDHLPVVI-----KYSTNFMRNVKTYPILGRANWALFKRI 268
Query: 392 V-------DMKINQVQSDYCSAD----SFTKILIEAADESFPVKRVSKGKIPSP 264
+ ++ +N Q D SFT+++ A ++ P K + K+ P
Sbjct: 269 INERLMVEEVVVNCSQISTLDIDNLIGSFTRVINYAFLKAVPHKPIHHSKLTLP 322
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 53.6 bits (123), Expect = 3e-07
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 15/174 (8%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLCVLNSGSPT---TRSRASSNVLDLS 570
FL+ GDFN H +W N +G L E+ D +L PT +A ++ LDL
Sbjct: 104 FLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPHNHKAKASTLDL- 162
Query: 569 ICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNN-DWDVFKQN 393
C N+ + L L SDH P++I +TN + Y I +W +FK+
Sbjct: 163 -CLTNIPNQLANPAVMQELSSDHLPVVI-----KYSTNFMRNVKTYPILGRANWALFKRI 216
Query: 392 V-------DMKINQVQSDYCSAD----SFTKILIEAADESFPVKRVSKGKIPSP 264
+ ++ +N Q D SFT+++ A ++ P K + K+ P
Sbjct: 217 INERLMVEEVVVNCSQISTLDIDNLIGSFTRVINYAFLKAVPHKPIHHSKLTLP 270
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 53.2 bits (122), Expect = 4e-07
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 13/164 (7%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLC-VLNSGSPT---TRSRASSNVLDL 573
F+L GD+N H WG G+ L E + + ++ +G T +R + + +D
Sbjct: 148 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDF 207
Query: 572 SICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNT---QKPRMKYSIRNNDWDVF 402
SIC L + + L SDH PI++ + N++TNT QK +N + ++F
Sbjct: 208 SICK-GLGRFEKRISSGADLSSDHLPILLEI---NLDTNTLFLQKQNNNILKKNTNIELF 263
Query: 401 KQNVDMKI-----NQVQSDYCSA-DSFTKILIEAADESFPVKRV 288
K+ ++ KI +V D A +F K + ++A ES P R+
Sbjct: 264 KKVLERKILLNTEIRVAEDINDAISTFMKNIKDSAAESTPSPRI 307
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 52.0 bits (119), Expect = 8e-07
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 10/161 (6%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLC-VLNSGSPT---TRSRASSNVLDL 573
F+L GD+N H WG G+ L E + + ++ +G T +R + + +D
Sbjct: 32 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDF 91
Query: 572 SICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQN 393
SIC L + S+ L SDH PI++ + QK + + ++FK
Sbjct: 92 SICK-GLGRLEKRISSSADLSSDHLPILLEINLDTSTLFLQKQNNNILKKTTNIELFKTV 150
Query: 392 VDMKI-----NQVQSDYCSA-DSFTKILIEAADESFPVKRV 288
++ KI +V D A + F K + ++ADES P R+
Sbjct: 151 LERKILLNTEIRVAEDINDAINIFIKNIKDSADESTPSPRI 191
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 52.0 bits (119), Expect = 8e-07
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 10/161 (6%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLC-VLNSGSPT---TRSRASSNVLDL 573
F+L GD+N H WG G+ L E + + ++ +G T +R + + +D
Sbjct: 148 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDF 207
Query: 572 SICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQN 393
SIC L + S+ L SDH PI++ + QK + + ++FK
Sbjct: 208 SICK-GLGRLEKRISSSADLSSDHLPILLEINLDTSTLFLQKQNNNILKKTTNIELFKTV 266
Query: 392 VDMKI-----NQVQSDYCSA-DSFTKILIEAADESFPVKRV 288
++ KI +V D A + F K + ++ADES P R+
Sbjct: 267 LERKILLNTEIRVAEDINDAINIFIKNIKDSADESTPSPRI 307
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 50.4 bits (115), Expect = 3e-06
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLCVLNSGSPTTRS---RASSNVLDLS 570
F+ GD+N H WG+P + G L E+I + VL +G PT S + + LD
Sbjct: 133 FIAGGDYNAKHAWWGNPRSCPRGKMLQEVIAHGQYQVLATGEPTFYSYNPLLTPSALDFF 192
Query: 569 ICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKP-RMKYSIRNNDWDVFKQN 393
I L+ T L SDH PI+ L T +KP R++ N D ++FK +
Sbjct: 193 ITCGYGMGRLDVQTLQE-LSSDHLPILAVLH----ATPLKKPQRVRLLAHNADINIFKTH 247
Query: 392 VDM--KINQVQSDYCSADSFTKILIEAADES 306
++ ++N + D+ T + + E+
Sbjct: 248 LEQLSEVNMQILEAVDIDNATSLFMSKLSEA 278
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 50.4 bits (115), Expect = 3e-06
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 10/163 (6%)
Frame = -3
Query: 746 QPFLLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLCVLNSGSPTTRSRASSNV---LD 576
Q +L+ GD+N H WG N+ G EL E + +L +GSPT S+ +D
Sbjct: 131 QRYLVGGDWNARHWLWGDTCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCID 190
Query: 575 LSICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQ 396
++ + L T S L SDH P+II++ + + N P + ++ D F +
Sbjct: 191 FAVYH-GIPDHLATITQSWDLDSDHLPLIISIETDSTHVN---PSPRLVTKHTDLLAFSR 246
Query: 395 NVDMKI------NQVQSDYCSADSFTKILIEAADES-FPVKRV 288
++ I N + + D+ T+ + AA S PV R+
Sbjct: 247 QLESLISLNTTLNSGEEIEMAVDNLTESIHRAAAVSTSPVPRI 289
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 49.6 bits (113), Expect = 4e-06
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 12/162 (7%)
Frame = -3
Query: 737 LLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLC-VLNSGSPTT---RSRASSNVLDLS 570
+L GD+N H WG G+ L + I ++ ++ +GS T +R S + +D S
Sbjct: 161 ILCGDWNAKHRQWGCIRACQRGAALYDAIQADSMAEIVATGSATHFPHDTRKSPSAIDFS 220
Query: 569 ICSANLASSLNWSTFSSTLGSDHYPII--INLPFKNINTNTQKPRMKYSIRNNDWDVFKQ 396
IC L + S+ L SDH PI+ INL K I + QK + + ++FK
Sbjct: 221 ICK-RLGRYEKRISSSAHLSSDHLPILLEINLDIKTI--SLQKQNNNILKKTTNIELFKN 277
Query: 395 NVDMKI-----NQVQSDYCSA-DSFTKILIEAADESFPVKRV 288
++ KI +V D A + F K + ++A ES P R+
Sbjct: 278 VLERKILLNTEIRVAEDINDAINIFIKNIKDSAAESTPSPRI 319
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 49.6 bits (113), Expect = 4e-06
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLC-VLNSGSPT---TRSRASSNVLDL 573
F+L GD+N H WG G+ L E + + ++ +G T +R + + +D
Sbjct: 148 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDF 207
Query: 572 SICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQN 393
SIC L + + L SDH PI++ + QK + + ++FK
Sbjct: 208 SICK-GLGRLEKRISSVADLSSDHLPILLEINLDTSTLFLQKQNNNILKKTTNIELFKTV 266
Query: 392 VDMKI-----NQVQSDYCSA-DSFTKILIEAADESFPVKRV 288
++ KI +V D A + F K + ++ADES P R+
Sbjct: 267 LERKILLNTEIRVAEDINDAINIFIKNIKDSADESTPSPRI 307
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 47.6 bits (108), Expect = 2e-05
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLCVLNSGSPTT---RSRASSNVLDLS 570
F++ GD+N SH WG+ +N G L ++ + L +G PT R S +D +
Sbjct: 132 FIVAGDWNASHWLWGAGRSNQRGIALANLVLNSEVDSLATGGPTRYPYGCRGSPGYIDFA 191
Query: 569 ICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSI-RNNDWDVFKQN 393
+ L N S L SDH P++I L I+ P+M+ I R + +VF+
Sbjct: 192 LTKGVLGIHANISAVVE-LSSDHLPLVITLDAGAIS----YPKMERLITRRTNLEVFQSQ 246
Query: 392 VD 387
++
Sbjct: 247 LE 248
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 46.0 bits (104), Expect = 6e-05
Identities = 53/240 (22%), Positives = 103/240 (42%), Gaps = 11/240 (4%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLEII--DYHNLCVLNSGSPTTRSRASSNVLDL-- 573
F+ GD+N H WGS N G +L + I + L ++ GSPT + + DL
Sbjct: 132 FIAAGDYNAKHTHWGSRLVNPKGKQLYKTIIKATNKLDHVSPGSPTYWPSDLNKLPDLID 191
Query: 572 SICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQN 393
+ N++ SL + L SDH P++I+L + N + P S + N W +K+
Sbjct: 192 FAVTKNISRSLVKAECLPDLSSDHSPVLIHL--RRYAENVKPPTRLTSSKTN-WLRYKKY 248
Query: 392 VDMKIN-----QVQSDYCSAD-SFTKILIEAADESFPVKRVSKGKIPSPPWWDNECSEAI 231
+ I +SD S + IL AA + P +++ I S + + + +
Sbjct: 249 ISSHIELSPKLNTESDIESCTCALQSILTAAALTATP--KITNNTINSKK-TNVQIEQLV 305
Query: 230 KSRKEAEMNYLAYTSSENFDLLSKSITETRKLFKKKKFDSWRKFCSEISP-DIQPSAVWQ 54
++ + + S L + + K+++ D R++ +++P + ++W+
Sbjct: 306 HVKRRLRREWQSSRSPTAKQKLKVATRKLANALKQEEDDDQRRYIEQLTPTGTKQKSLWR 365
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 46.0 bits (104), Expect = 6e-05
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLE-IIDYHNLCVLNSGSPT---TRSRASSNVLDL 573
F+L GD+NC H WG+ + G L + I+ +L ++ +G T + + LD
Sbjct: 152 FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHATHFPFDKKKQPSALDF 211
Query: 572 SICSANLASSLNWSTFSS-TLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQ 396
+IC L T+S+ L SDH PI I L + + K + D FK+
Sbjct: 212 AICKGFHTQKL--KTYSTDELSSDHLPIQIVLDPDDSDWQHNKTNNAIIQKRTDLTKFKK 269
Query: 395 NVDMKI 378
N++ KI
Sbjct: 270 NLENKI 275
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 46.0 bits (104), Expect = 6e-05
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLE-IIDYHNLCVLNSGSPT---TRSRASSNVLDL 573
F+L GD+NC H WG+ + G L + I+ +L ++ +G T + + LD
Sbjct: 152 FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHATHFPFDKKKQPSALDF 211
Query: 572 SICSANLASSLNWSTFSS-TLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQ 396
+IC L T+S+ L SDH PI I L + + K + D FK+
Sbjct: 212 AICKGFHTQKL--KTYSTDELSSDHLPIQIVLDPDDSDWQHNKTNNAIIQKRTDLTKFKK 269
Query: 395 NVDMKI 378
N++ KI
Sbjct: 270 NLENKI 275
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 46.0 bits (104), Expect = 6e-05
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLE-IIDYHNLCVLNSGSPT---TRSRASSNVLDL 573
F+L GD+NC H WG+ + G L + I+ +L ++ +G T + + LD
Sbjct: 152 FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHATHFPFDKKKQPSALDF 211
Query: 572 SICSANLASSLNWSTFSS-TLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQ 396
+IC L T+S+ L SDH PI I L + + K + D FK+
Sbjct: 212 AICKGFHTQKL--KTYSTDELSSDHLPIQIVLDPDDSDWQHNKTNNAIIQKRTDLTKFKK 269
Query: 395 NVDMKI 378
N++ KI
Sbjct: 270 NLENKI 275
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 43.6 bits (98), Expect = 3e-04
Identities = 48/244 (19%), Positives = 102/244 (41%), Gaps = 11/244 (4%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLEII--DYHNLCVLNSGSPT---TRSRASSNVLD 576
F+ GD+N H WGS G +L + + L ++ G PT R +++D
Sbjct: 131 FIAAGDYNAKHTHWGSRLVTPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLID 190
Query: 575 LSICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQ 396
+I + ++ ++ + + L SDH P+ +N+ ++ + P + + +W +++
Sbjct: 191 FAI-TKHVPRNMVTAEALADLSSDHSPVFLNMLTRH---HIVDPPYRLTNFRTNWPRYQK 246
Query: 395 NVDMKIN-----QVQSDY-CSADSFTKILIEAADESFPVKRVSKGKIPSPPWWDNECSEA 234
V I + D S ++ IL+ AA S P +K P+ + E
Sbjct: 247 YVCSHIELTTALSTKEDIDKSTETLENILVSAAKASTPPVTYAK---PNYIKTNREIERL 303
Query: 233 IKSRKEAEMNYLAYTSSENFDLLSKSITETRKLFKKKKFDSWRKFCSEISPDIQPSAVWQ 54
+ ++ ++ + S +L + K+++ +S R + ++SP +W
Sbjct: 304 VLDKRRLRWDWQSNRSPITKHMLKIATRRLTNALKQEEKNSQRSYIEQLSPTSTKYPLW- 362
Query: 53 KIHR 42
+ HR
Sbjct: 363 RAHR 366
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 43.2 bits (97), Expect = 4e-04
Identities = 48/244 (19%), Positives = 102/244 (41%), Gaps = 11/244 (4%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLEII--DYHNLCVLNSGSPT---TRSRASSNVLD 576
F+ GD+N H WGS + G +L + + L ++ G PT R +++D
Sbjct: 131 FIAAGDYNAKHTHWGSRLVSPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLID 190
Query: 575 LSICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQ 396
+I + ++ ++ + + L SDH P+ +N+ + + P + + +W +++
Sbjct: 191 FAI-TKHVPRNMVTAEALADLSSDHSPVFLNMLTR---PHIVDPPYRLTNFRTNWPRYQK 246
Query: 395 NVDMKIN-----QVQSDY-CSADSFTKILIEAADESFPVKRVSKGKIPSPPWWDNECSEA 234
V I + D S ++ IL+ AA S P +K P+ + E
Sbjct: 247 YVCSHIELTTALSTKEDIDKSTETLENILVSAAKASTPPVTYAK---PNYIKTNREIERL 303
Query: 233 IKSRKEAEMNYLAYTSSENFDLLSKSITETRKLFKKKKFDSWRKFCSEISPDIQPSAVWQ 54
+ ++ ++ + S +L + K+++ +S R + ++SP +W
Sbjct: 304 VLDKRRLRRDWQSNRSPITKHMLKIATRRLTNALKQEEKNSQRSYIEQLSPTSTKYPLW- 362
Query: 53 KIHR 42
+ HR
Sbjct: 363 RAHR 366
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 37.5 bits (83), Expect = 0.019
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -3
Query: 740 FLLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLCVLNSGSPT 609
F+ GD+N H WG+P + G L E+I + VL +G PT
Sbjct: 133 FIAGGDYNAKHAWWGNPRSCPRGKMLQEVIAHGQYQVLATGEPT 176
>AY075196-1|AAL68065.1| 608|Drosophila melanogaster AT13609p
protein.
Length = 608
Score = 29.9 bits (64), Expect = 3.9
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +3
Query: 390 YILFKYIPVVVSDTIF-----HSRFLSIRINIFKRQIYYNRVMITTKRRR 524
YI+ + VV + IF HS+ IR+ +F R +++ R+ I + R
Sbjct: 343 YIINDFFAVVFNPPIFRLKGHHSKLCEIRVTVFDRLVHFRRIPIVLEVHR 392
>AE014134-1621|AAF52762.1| 602|Drosophila melanogaster CG17005-PA
protein.
Length = 602
Score = 29.9 bits (64), Expect = 3.9
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +3
Query: 390 YILFKYIPVVVSDTIF-----HSRFLSIRINIFKRQIYYNRVMITTKRRR 524
YI+ + VV + IF HS+ IR+ +F R +++ R+ I + R
Sbjct: 332 YIINDFFAVVFNPPIFRLKGHHSKLCEIRVTVFDRLVHFRRIPIVLEVHR 381
>L14644-1|AAB88625.1| 2895|Drosophila melanogaster hyperplastic
discs protein protein.
Length = 2895
Score = 28.7 bits (61), Expect = 8.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 365 SDYCSADSFTKILIEAADESFPVKRVSKGKIPSPPWWD 252
+D CS +S T +L + +P+ + G I P W+D
Sbjct: 827 NDDCSGNSSTIVLRDGNGALYPLAKDCLGSIKDPQWFD 864
>AE014297-3103|AAF55957.3| 733|Drosophila melanogaster CG5740-PA,
isoform A protein.
Length = 733
Score = 28.7 bits (61), Expect = 8.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 541 REEAKLAEQIDRSRTFELALERVVGDPEFKTHKL 642
+++A+ A Q+D + LE VGD +FK KL
Sbjct: 35 QQKARFASQLDEAHKNASQLEAKVGDMQFKIQKL 68
>AE014297-1012|AAF54431.2| 2885|Drosophila melanogaster CG9484-PA
protein.
Length = 2885
Score = 28.7 bits (61), Expect = 8.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 365 SDYCSADSFTKILIEAADESFPVKRVSKGKIPSPPWWD 252
+D CS +S T +L + +P+ + G I P W+D
Sbjct: 834 NDDCSGNSSTIVLRDGNGALYPLAKDCLGSIKDPQWFD 871
>AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA
protein.
Length = 241
Score = 28.7 bits (61), Expect = 8.9
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -3
Query: 728 GDFNCSHMSWGSPSNNYYGSELLEIIDYHNLCVLNSGSPTTRSRASSNVLDLSICSANLA 549
GD+N SH WG+ N G L ++ + L +G P A + +A LA
Sbjct: 57 GDWNTSHWLWGAERCNRRGRALANLVLSTGMSSLVTGGPKRFQEAVDTLTHNIKAAARLA 116
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,105,384
Number of Sequences: 53049
Number of extensions: 562071
Number of successful extensions: 1690
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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