Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0928
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    75   7e-14
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    51   8e-07
AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 5/151 (3%)
 Frame = -3

Query: 737 LLMGDFNCSHMSWGSP-SNNYYGSELLEIIDYH-NLCVLNSGSPTTRSRASSNVLDLSIC 564
           ++ GD N  H +W S  S +  G EL E+ID H +L + N    T     S +  D++IC
Sbjct: 35  IISGDVNAHHSAWHSEGSEDTRGRELAELIDLHPDLIIQNEQVHTRADTYSISSPDITIC 94

Query: 563 SANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQNVDM 384
           +A+LA+  +WST    LGSDH P  + L      T  +  R+  + +  +W +F+ +++ 
Sbjct: 95  TADLATKCHWSTLYK-LGSDHIP--MKLKINQAATPKRPKRLVANFKKANWQLFRDHIES 151

Query: 383 KINQVQS--DYCSADS-FTKILIEAADESFP 300
           +IN      D    +  F K+++EA  ++ P
Sbjct: 152 RINGYSGPMDAIPMEKFFNKVILEADKKAVP 182


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 62/255 (24%), Positives = 115/255 (45%), Gaps = 11/255 (4%)
 Frame = -3

Query: 737  LLMGDFNCSHMSWGSPSNNYYGSELLEIIDYHNLCVLNSGSPTTRSRASSNVLDLSICSA 558
            +L GD N   ++W S +++ +       +   NL       PT  S +SSN+LDL  CSA
Sbjct: 468  ILAGDLNFPQINWSSANSSLH--PFASFLSSINLSQ-KVQFPTRLSASSSNILDLVACSA 524

Query: 557  NLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDVFKQNVDMKI 378
            ++ S L+ S   + L SDH  +   +P  +   ++  P  + S  +  +D  K N  + +
Sbjct: 525  DI-SILHLSPQPALLNSDHLSVSFKIPILS-PIDSPCPTSQDSNSSPMFDYKKCNFPL-L 581

Query: 377  NQVQ----SDYCSA-------DSFTKILIEAADESFPVKRVSKGKIPSPPWWDNECSEAI 231
            N+ +     ++CS        D    IL        P K +S  K PSP    +     +
Sbjct: 582  NRARVNWDFEFCSQKSVSEKFDRLLSILNNLLTLHCPTKSISVSKSPSP---YHNIHRKL 638

Query: 230  KSRKEAEMNYLAYTSSENFDLLSKSITETRKLFKKKKFDSWRKFCSEISPDIQPSAVWQK 51
            K R   +++ L  +    F+++  + ++ RKL++     ++RK+      DI  ++ + K
Sbjct: 639  K-RLRNKISKLILSRKCTFEIIKTAQSKYRKLYR-----NFRKYVRRFENDIIANSNFTK 692

Query: 50   IHRFRSLYKESKSTV 6
            I R  +   +S++ V
Sbjct: 693  IRRLINSRLKSQNLV 707


>AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical
           protein ZK355.5 protein.
          Length = 505

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
 Frame = -3

Query: 656 IIDYHNLCVLNSGSPTTRSRASSNVLDLS-ICSANLASSLNWSTFSSTLGSDHYPIIINL 480
           I++Y N  VLN G   +   +S N++ LS +        + W+  +          I++ 
Sbjct: 201 ILEYQNCTVLNGGLRLSNFSSSENLMALSKVKQIKGDVEIQWNNITGLFFLKSLTTILST 260

Query: 479 PFK-------NINTNTQKPRMKYSIRNNDWDVFKQNVDMKINQVQSDYC 354
             +       NI+ N +  R+ +   N  WD++     + +  +  D+C
Sbjct: 261 NGRGRKKVIVNIHDNYEMKRLGFEKINLFWDLYGGKFFINLQNLHPDFC 309


>Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical
           protein F25H5.5 protein.
          Length = 725

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
 Frame = -3

Query: 698 GSPSNNYYGSELLEIIDYHNLCVLNSGSPTTRSRASSNVLDLSICSANLASSLNW-STFS 522
           GS  +N+      ++++ + +  L + +  T    S+++L+L   S  ++ S  +  T  
Sbjct: 225 GSTVSNFDSRSEADVVEKNGVVQLPTMTEITGG--SNDILNLCPGSFGVSQSAGFPDTLQ 282

Query: 521 STLGSDHYPIIINLPFKNINTNTQKPRMKYSIRNNDWDV 405
             +  D     INLP  + + ++ KPR++ S   ++ DV
Sbjct: 283 MLIEEDTTERKINLPQNSTSVSSDKPRLEESESEDEDDV 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,212,295
Number of Sequences: 27780
Number of extensions: 300184
Number of successful extensions: 926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)