Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0928
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   4.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.0  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   4.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.3  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 251 NECSEAIKSRKEAEMNYLAYTSSENFDLLSKSITETRKLFKKKKFDSWRKF 99
           N+C+E  K      +NYL     ++++ LS     T +   KK+++   +F
Sbjct: 73  NKCNEKQKHTANKVVNYLKTKRPKDWERLSAKYDSTGEY--KKRYEHGLQF 121


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 233 IKSRKEAEMNYLAYTS--SENFDLLSKSITETRKLFKKKKFDSWRKFCSEIS 84
           IK  +E   +Y+  +S  SEN  +   S+ E   ++ +  F    + CSEIS
Sbjct: 611 IKQNEEITFDYMCQSSKNSENSIMQRASMKENLNVYPE--FQENVQLCSEIS 660


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 251 NECSEAIKSRKEAEMNYLAYTSSENFDLLSKSITETRKLFKKKKFDSWRKF 99
           N+C+E  K      +NYL     ++++ LS     T +   KK+++   +F
Sbjct: 73  NKCNEKQKHTANKVVNYLKTKRPKDWERLSAKYDSTGEY--KKRYEHGLQF 121


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 18  RFFVKRSKPMDFLPNSTRLDIRRNFRTKLSPAVKL 122
           R F K  K MD +      + R+N    L+PAV +
Sbjct: 447 RLFGKDRKIMDMVREKIIEEKRKNKNKNLTPAVNI 481


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -3

Query: 377 NQVQSDYCSADSFTKILIEAADESFPVKRVSKGKIPSPPWWDNECSEAIKSRK 219
           NQ   ++        I IEA         V +GK+  PP    E   AIK+ K
Sbjct: 618 NQAVREFAREIDAGYITIEAIIGGGEFGDVCRGKLKLPPDGRTEIDVAIKTLK 670


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,657
Number of Sequences: 438
Number of extensions: 4056
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)