BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0928 (751 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g06700.1 68418.m00757 expressed protein strong similarity to ... 33 0.27 At1g68210.1 68414.m07792 two-component responsive regulator fami... 31 0.82 At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical ... 30 1.9 At4g24060.1 68417.m03456 Dof-type zinc finger domain-containing ... 29 3.3 At1g66140.1 68414.m07506 zinc finger (C2H2 type) family protein ... 29 4.4 At4g39400.1 68417.m05577 brassinosteroid insensitive 1 (BRI1) id... 28 7.6 At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-d... 28 7.6 >At5g06700.1 68418.m00757 expressed protein strong similarity to unknown protein (emb|CAB82953.1) Length = 608 Score = 32.7 bits (71), Expect = 0.27 Identities = 24/85 (28%), Positives = 37/85 (43%) Frame = -3 Query: 689 SNNYYGSELLEIIDYHNLCVLNSGSPTTRSRASSNVLDLSICSANLASSLNWSTFSSTLG 510 S+N GS+ I Y L + S PT RS +++ L ++ S L S+ T + Sbjct: 80 SDNTSGSQFSSIFSYI-LPNVTSTKPTNRSSDATDSLSVNATSPPLNSNSKNGTLQTPAP 138 Query: 509 SDHYPIIINLPFKNINTNTQKPRMK 435 H P+ N F++ N P K Sbjct: 139 ETHTPVAKNTTFESPIVNGTNPDAK 163 >At1g68210.1 68414.m07792 two-component responsive regulator family protein / response regulator family protein contains Pfam profile: PF00072 response regulator receiver domain Length = 663 Score = 31.1 bits (67), Expect = 0.82 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%) Frame = -3 Query: 575 LSICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRM---KYSIRN---ND 414 LSI S+++ SS S+ L S++ PI+ LP + +NT +M + SI N Sbjct: 303 LSIDSSSIDSSSYTGLVSTGLSSENSPILYGLPSNDGASNTCTSQMESERISIPQYDPNQ 362 Query: 413 WDVFKQNVDMKINQVQSDYCS-ADSFTKILIE 321 + ++ +NQ+ D+ S DSF ++ E Sbjct: 363 CHPHRSILETDVNQIDLDFTSILDSFDPLVDE 394 >At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical to WAVE-DAMPENED2 [Arabidopsis thaliana] GI:28453880 Length = 293 Score = 29.9 bits (64), Expect = 1.9 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 3/118 (2%) Frame = -3 Query: 401 KQNVDMKINQVQSDYCSADSFTKILIEAADESFPVKRVSKGKIPSPPWWDNECSEAIKSR 222 ++N+ K N V Y + + ++ + FP+ R K+ CS+AI S Sbjct: 111 RKNLKFKANPVPDFY-----YQRPPVKPELKKFPLTRPKSPKLNLSR--RKSCSDAITSS 163 Query: 221 KEAEMNYLAYTSSENFDL--LSKSITETRKLFKKKK-FDSWRKFCSEISPDIQPSAVW 57 E N S D L SI + K+ K F WRK C E + + W Sbjct: 164 GEENSNSQNRQSVAYVDRERLQHSINNEPRFSKEAKDFFQWRKSCEEEIDSVNKNKTW 221 >At4g24060.1 68417.m03456 Dof-type zinc finger domain-containing protein Dof zinc finger protein - Oryza sativa,PID:d1042342 Length = 342 Score = 29.1 bits (62), Expect = 3.3 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -3 Query: 626 NSGSPTTRSRASSNVLDLSICSANLASSLNWSTFSSTLGSDHYPIIINLPFKN 468 N G+ T +S ++N L +S CSA SSL+ +S G+ + P N Sbjct: 181 NIGNNTNKSNNNNNPLIVSSCSAMATSSLDLIRNNSNNGNSSNSSFMGFPVHN 233 >At1g66140.1 68414.m07506 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type Length = 260 Score = 28.7 bits (61), Expect = 4.4 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Frame = -3 Query: 584 VLDLSICSANLASSLNWSTFSSTLGSDHYPIIIN--LPFKNINTN 456 +LDL I +++ +SS ++ S +G D+ PI +N L F N N N Sbjct: 4 ILDLEIEASSGSSSSQVASNLSPVGEDYKPISLNLSLSFNNNNNN 48 >At4g39400.1 68417.m05577 brassinosteroid insensitive 1 (BRI1) identical to GI:2392895 Length = 1196 Score = 27.9 bits (59), Expect = 7.6 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Frame = -3 Query: 719 NCSHMSWGSPSNNYYGSELLEIID-YHNLCVLNSGSPTTRSRASSNV-LDLSICSANLAS 546 NC++++W S SNN E+ + I NL +L + + S N+ +L C + + Sbjct: 510 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILK----LSNNSFSGNIPAELGDCRSLIWL 565 Query: 545 SLNWSTFSSTL 513 LN + F+ T+ Sbjct: 566 DLNTNLFNGTI 576 >At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-dependent DNA polymerase, putative similar to reverse transcriptase [Arabidopsis thaliana] GI:976278; contains Pfam profile PF00075: RNase H Length = 575 Score = 27.9 bits (59), Expect = 7.6 Identities = 17/73 (23%), Positives = 34/73 (46%) Frame = -3 Query: 221 KEAEMNYLAYTSSENFDLLSKSITETRKLFKKKKFDSWRKFCSEISPDIQPSAVWQKIHR 42 K+ E LA + + +LS+ + K+FK + F + + +PS VW+ IH Sbjct: 59 KDIEAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGS--RPSFVWKSIHA 116 Query: 41 FRSLYKESKSTVL 3 + + ++ V+ Sbjct: 117 SQEILRQGARAVV 129 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,227,166 Number of Sequences: 28952 Number of extensions: 272392 Number of successful extensions: 926 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 900 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 926 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1663169840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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