Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0928
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06700.1 68418.m00757 expressed protein strong similarity to ...    33   0.27 
At1g68210.1 68414.m07792 two-component responsive regulator fami...    31   0.82 
At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical ...    30   1.9  
At4g24060.1 68417.m03456 Dof-type zinc finger domain-containing ...    29   3.3  
At1g66140.1 68414.m07506 zinc finger (C2H2 type) family protein ...    29   4.4  
At4g39400.1 68417.m05577 brassinosteroid insensitive 1 (BRI1) id...    28   7.6  
At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-d...    28   7.6  

>At5g06700.1 68418.m00757 expressed protein strong similarity to
           unknown protein (emb|CAB82953.1)
          Length = 608

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = -3

Query: 689 SNNYYGSELLEIIDYHNLCVLNSGSPTTRSRASSNVLDLSICSANLASSLNWSTFSSTLG 510
           S+N  GS+   I  Y  L  + S  PT RS  +++ L ++  S  L S+    T  +   
Sbjct: 80  SDNTSGSQFSSIFSYI-LPNVTSTKPTNRSSDATDSLSVNATSPPLNSNSKNGTLQTPAP 138

Query: 509 SDHYPIIINLPFKNINTNTQKPRMK 435
             H P+  N  F++   N   P  K
Sbjct: 139 ETHTPVAKNTTFESPIVNGTNPDAK 163


>At1g68210.1 68414.m07792 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 663

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
 Frame = -3

Query: 575 LSICSANLASSLNWSTFSSTLGSDHYPIIINLPFKNINTNTQKPRM---KYSIRN---ND 414
           LSI S+++ SS      S+ L S++ PI+  LP  +  +NT   +M   + SI     N 
Sbjct: 303 LSIDSSSIDSSSYTGLVSTGLSSENSPILYGLPSNDGASNTCTSQMESERISIPQYDPNQ 362

Query: 413 WDVFKQNVDMKINQVQSDYCS-ADSFTKILIE 321
               +  ++  +NQ+  D+ S  DSF  ++ E
Sbjct: 363 CHPHRSILETDVNQIDLDFTSILDSFDPLVDE 394


>At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical to
           WAVE-DAMPENED2 [Arabidopsis thaliana] GI:28453880
          Length = 293

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
 Frame = -3

Query: 401 KQNVDMKINQVQSDYCSADSFTKILIEAADESFPVKRVSKGKIPSPPWWDNECSEAIKSR 222
           ++N+  K N V   Y     + +  ++   + FP+ R    K+         CS+AI S 
Sbjct: 111 RKNLKFKANPVPDFY-----YQRPPVKPELKKFPLTRPKSPKLNLSR--RKSCSDAITSS 163

Query: 221 KEAEMNYLAYTSSENFDL--LSKSITETRKLFKKKK-FDSWRKFCSEISPDIQPSAVW 57
            E   N     S    D   L  SI    +  K+ K F  WRK C E    +  +  W
Sbjct: 164 GEENSNSQNRQSVAYVDRERLQHSINNEPRFSKEAKDFFQWRKSCEEEIDSVNKNKTW 221


>At4g24060.1 68417.m03456 Dof-type zinc finger domain-containing
           protein Dof zinc finger protein - Oryza
           sativa,PID:d1042342
          Length = 342

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 626 NSGSPTTRSRASSNVLDLSICSANLASSLNWSTFSSTLGSDHYPIIINLPFKN 468
           N G+ T +S  ++N L +S CSA   SSL+    +S  G+      +  P  N
Sbjct: 181 NIGNNTNKSNNNNNPLIVSSCSAMATSSLDLIRNNSNNGNSSNSSFMGFPVHN 233


>At1g66140.1 68414.m07506 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 260

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -3

Query: 584 VLDLSICSANLASSLNWSTFSSTLGSDHYPIIIN--LPFKNINTN 456
           +LDL I +++ +SS   ++  S +G D+ PI +N  L F N N N
Sbjct: 4   ILDLEIEASSGSSSSQVASNLSPVGEDYKPISLNLSLSFNNNNNN 48


>At4g39400.1 68417.m05577 brassinosteroid insensitive 1 (BRI1)
           identical to GI:2392895
          Length = 1196

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = -3

Query: 719 NCSHMSWGSPSNNYYGSELLEIID-YHNLCVLNSGSPTTRSRASSNV-LDLSICSANLAS 546
           NC++++W S SNN    E+ + I    NL +L      + +  S N+  +L  C + +  
Sbjct: 510 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILK----LSNNSFSGNIPAELGDCRSLIWL 565

Query: 545 SLNWSTFSSTL 513
            LN + F+ T+
Sbjct: 566 DLNTNLFNGTI 576


>At4g29090.1 68417.m04163 reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278;
           contains Pfam profile PF00075: RNase H
          Length = 575

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = -3

Query: 221 KEAEMNYLAYTSSENFDLLSKSITETRKLFKKKKFDSWRKFCSEISPDIQPSAVWQKIHR 42
           K+ E   LA    + + +LS+  +   K+FK + F       + +    +PS VW+ IH 
Sbjct: 59  KDIEAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGS--RPSFVWKSIHA 116

Query: 41  FRSLYKESKSTVL 3
            + + ++    V+
Sbjct: 117 SQEILRQGARAVV 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,227,166
Number of Sequences: 28952
Number of extensions: 272392
Number of successful extensions: 926
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)