Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0927
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CD10C Cluster: Tubulin-tyrosine ligase family p...    36   0.93 
UniRef50_Q54NR4 Cluster: Putative uncharacterized protein; n=3; ...    34   2.8  
UniRef50_Q7S3B2 Cluster: Predicted protein; n=2; Neurospora cras...    34   3.7  
UniRef50_Q79LY0 Cluster: Effector protein hopD2; n=1; Pseudomona...    33   4.9  
UniRef50_A4FXB2 Cluster: GCN5-related N-acetyltransferase; n=1; ...    33   6.5  
UniRef50_Q5BW83 Cluster: SJCHGC07914 protein; n=1; Schistosoma j...    33   8.6  

>UniRef50_UPI00006CD10C Cluster: Tubulin-tyrosine ligase family
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           Tubulin-tyrosine ligase family protein - Tetrahymena
           thermophila SB210
          Length = 1160

 Score = 35.9 bits (79), Expect = 0.93
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 210 FFVNGLRSNAPFNFVLFEHKMFSENVITNTDNTHRLLCNTNHNEPV 73
           F++  LRS+  F  + + +    +  +    N+HR+  N NHN+P+
Sbjct: 790 FYLERLRSHPTFKHLYYSNSQSQKQHMNKRKNSHRISVNHNHNDPI 835


>UniRef50_Q54NR4 Cluster: Putative uncharacterized protein; n=3;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 734

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 24/95 (25%), Positives = 41/95 (43%)
 Frame = -1

Query: 366 CTSEFLYLNAFQGGHAFEFRIMQLKRFNPVFFFIQA*RRVTFFDRCLRFHGFFFVNGLRS 187
           C S  +YLN  +  +     + ++       F +++ R     D    F    + N  + 
Sbjct: 324 CIS-IIYLNLNESNNIIFKNVNEINELYKSLFLLKSDRNQILLD----FIYDQYSNNNKD 378

Query: 186 NAPFNFVLFEHKMFSENVITNTDNTHRLLCNTNHN 82
           N  FNF+L   KM+ EN  +N D  + +L N N +
Sbjct: 379 NEKFNFILKLLKMYFENCNSNHDEFYSMLLNNNRH 413


>UniRef50_Q7S3B2 Cluster: Predicted protein; n=2; Neurospora
           crassa|Rep: Predicted protein - Neurospora crassa
          Length = 1144

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -1

Query: 447 GVPA-PRTAAGPNFAERSRNAGLPFPADCT--SEFLYLNAFQGGHAFEFRIMQLKR 289
           G PA P   + P+++ +S +AGLP P D    S      +FQGG A   R+  LKR
Sbjct: 661 GYPASPIQGSPPSYSSQSHSAGLPSPKDSADRSGPSRRQSFQGGGAPAMRVGSLKR 716


>UniRef50_Q79LY0 Cluster: Effector protein hopD2; n=1; Pseudomonas
           syringae pv. tomato|Rep: Effector protein hopD2 -
           Pseudomonas syringae pv. tomato
          Length = 468

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = -1

Query: 207 FVNGLRSNAPFNFVLFEHKMFSEN-VITNTDNTHRLLCNTNHNEPVG*NLYQLITVSKYV 31
           +V G +SN P    L    + SE  V+T    T+R +  T+HN P      +L+ + ++ 
Sbjct: 309 YVKGKKSN-PQTTELKNLNVRSEREVVTEAGATYRRVAITDHNRPSPEATDELVDIMRHC 367

Query: 30  CRASESLV--CN 1
            +A+ESLV  CN
Sbjct: 368 LQANESLVVHCN 379


>UniRef50_A4FXB2 Cluster: GCN5-related N-acetyltransferase; n=1;
           Methanococcus maripaludis|Rep: GCN5-related
           N-acetyltransferase - Methanococcus maripaludis
          Length = 135

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 529 TVYGNLNKSNALSISDFDGNVVNVLIFPSFKKCI 630
           TV  N+ +  AL     +GN+V VLIF  + KC+
Sbjct: 24  TVIKNIERKTALFTKSDNGNIVGVLIFSYYSKCL 57


>UniRef50_Q5BW83 Cluster: SJCHGC07914 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC07914 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 230

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -1

Query: 159 EHKMFSENVITNTDNTHRLLCNTNHNEPVG*NLYQLITVS 40
           E+ +   N +TNTD+TH LL   N  + V  +L   ITVS
Sbjct: 145 ENALHRNNFLTNTDDTHSLLLRENSGQVVVSDLSNDITVS 184


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,318,183
Number of Sequences: 1657284
Number of extensions: 13494148
Number of successful extensions: 31465
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31459
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)