Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0927
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   1.9  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    27   3.4  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   3.4  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   5.9  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 243 FFDRCLRFHGFFFVNGLRSN-APFNFVLFEHKMFS 142
           FF  C RFH   F++   SN  PF    F   +FS
Sbjct: 84  FFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFS 118


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 68  HPTGSL*FVLHNRRC--VLSVLVI-TFSENILCSKSTKLNGAFDRNPFTK 208
           HP   L    HNR+    L + V  TFS+NI  S  +++NG   +  F+K
Sbjct: 418 HPQKPLLEWKHNRKLDPTLKITVTATFSQNIYVSVYSQMNGVVQQIHFSK 467


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 229 TSVEECHSSLRLYKKKNRIKTL*LHYSKFECM 324
           T + E HS LRL + +N +    L+  +F C+
Sbjct: 79  TRLREVHSLLRLSENENIVNIFDLYIDQFRCL 110


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 95  LHNRRCVLSVLVITFSENILCSKSTKLNGAFDRNPFTK 208
           L N  C   V   T+S  +   K    N  F+R+PFT+
Sbjct: 55  LENILCFFLVYRTTYSFGVCLMKRFLFNKFFNRHPFTR 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,814
Number of Sequences: 5004
Number of extensions: 58286
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)