Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0927
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1315 + 36226262-36226533,36227946-36228060,36228710-362287... 32 0.49
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 29 2.6
01_06_1147 + 34892415-34893702,34894051-34894676 29 2.6
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606... 29 4.6
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072... 28 6.0
09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991... 28 8.0
01_06_1309 - 36170947-36171077,36171227-36172198,36172285-361724... 28 8.0
>01_06_1315 +
36226262-36226533,36227946-36228060,36228710-36228752,
36229953-36230329,36230330-36230481,36230591-36230838,
36230919-36231047,36231130-36231739,36231842-36232086,
36232195-36232325
Length = 773
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 438 APRTAAGPNFAERSRNAGLPFPA-DCTSEFLYLNAFQGGHAFEFRIMQLKRFNPVFFFI 265
A +T AGPN ++ GLP P +C+S+ Y Q G + R++ + +FF I
Sbjct: 417 ALQTGAGPNISDAYTFNGLPGPTYNCSSKDTYKVKVQPGRTYLLRLINSALNDELFFGI 475
>08_02_0520 - 18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 408 RNSGRQLCVGPVPHHSCYQIGHFRFVKRTAR 500
+ G ++ VGP+ HHSC I +F V+ ++
Sbjct: 1117 KRGGEEIYVGPLGHHSCDLIEYFEGVEGVSK 1147
>01_06_1147 + 34892415-34893702,34894051-34894676
Length = 637
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +1
Query: 394 SRSLGEIRAGSCAWGRYPTTAAIK*AISVLLSAPHARTDAVLRGNTVYGNLNKSNALSIS 573
S SL + G+ A G+ P + IS+ ++ A A G ++GNL SN L
Sbjct: 421 SGSLAVVLHGNKATGKAPLDWETRVKISLGVARGIAHLHAEGGGKFIHGNLKSSNILLSQ 480
Query: 574 DFDGNV 591
+ DG V
Sbjct: 481 NLDGCV 486
>02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,
6069207-6069291,6069421-6069580,6069667-6069743,
6069848-6069898,6069979-6070069,6070167-6070468,
6070549-6070830,6070911-6071388,6071457-6071560,
6071647-6071809,6071895-6072017,6072099-6072217,
6072304-6072636,6072713-6073003,6073088-6073171,
6073260-6073393,6073478-6073705,6073795-6073966,
6074062-6074316,6074408-6074668
Length = 1444
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 408 RNSGRQLCVGPVPHHSCYQIGHFRFVK 488
+ G ++ VGP+ H+SC+ I +F ++
Sbjct: 1072 KRGGEEIYVGPLGHNSCHLINYFEGIQ 1098
>08_02_1264 +
25706009-25706148,25706613-25706716,25707108-25707284,
25707775-25709708,25709781-25709867,25710058-25710091,
25710293-25710381,25710522-25710674
Length = 905
Score = 28.3 bits (60), Expect = 6.0
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
Frame = +2
Query: 104 RRCVLSVLVITFS-ENILCSKSTK----LNGAFDRNPFTKKNP*NRKHLSKNVTLRYACI 268
RRC+L+ L N L K+ + + +P + P K +NVT+ +C+
Sbjct: 529 RRCLLNTLSDDLDCSNELAGKTQEDEFPIISVHREHPLSSAEPSKLKAAGENVTVSASCV 588
Query: 269 KKKTGLKRFNCIILNSNACPP*NAFK*RNSDVQSAGNGRPAFRDLSAKFGPAAVRGAGT 445
K + LK+ N NA + S+G P F A G + G T
Sbjct: 589 AKLSPLKKSVVEPANENATQGTKCV----PEACSSGENSPVFYAARASAGNEPLNGQDT 643
>09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,
9919056-9919283,9919628-9919761,9919842-9919925,
9920007-9920297,9920569-9920901,9921029-9921171,
9921266-9921379,9921470-9921626,9921709-9921812,
9921914-9922074,9922158-9922474,9922574-9922855,
9923205-9923506,9923603-9923693,9923864-9923917,
9924052-9924128,9924213-9924372,9924473-9924557,
9924635-9924723,9925791-9925925
Length = 1341
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 408 RNSGRQLCVGPVPHHSCYQIGHFRFVKRTAR 500
+ G ++ VGPV HSC I +F ++ ++
Sbjct: 970 KRGGEEIYVGPVGQHSCELIRYFESIEGVSK 1000
>01_06_1309 -
36170947-36171077,36171227-36172198,36172285-36172413,
36172535-36172779,36172904-36173055,36173202-36173306
Length = 577
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 438 APRTAAGPNFAERSRNAGLPFPA-DCTSEFLYLNAFQGGHAFEFRIMQLKRFNPVFFFI 265
A +T GPN ++ GLP P +C+++ + + G + R++ + +FF I
Sbjct: 182 ATQTGGGPNVSDAFTINGLPGPLYNCSAKDTFKLKVEAGKTYMLRLINAALNDELFFSI 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,441,440
Number of Sequences: 37544
Number of extensions: 372838
Number of successful extensions: 856
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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