BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0927 (687 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45) 30 1.5 SB_11531| Best HMM Match : Fapy_DNA_glyco (HMM E-Value=2.7e-05) 29 2.7 SB_5868| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7 >SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45) Length = 1038 Score = 30.3 bits (65), Expect = 1.5 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = -1 Query: 201 NGLRSNAPFNFVLFEHK-MFSENVITNTDNTHRLLCNTNHN 82 +G++ + P FV+ + ++ ENV+TNT H L N N N Sbjct: 742 DGIKGHVPLGFVIVDKSILYKENVLTNTRFWH--LANLNMN 780 >SB_11531| Best HMM Match : Fapy_DNA_glyco (HMM E-Value=2.7e-05) Length = 245 Score = 29.5 bits (63), Expect = 2.7 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%) Frame = -1 Query: 165 LFEHKMFSENVITNTDNT--HRLLCNTNHNE 79 +FE++ F ENV+ N D++ ++ LC HN+ Sbjct: 146 MFEYQAFRENVLNNLDSSVFNKPLCEVLHNQ 176 >SB_5868| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 460 Score = 28.7 bits (61), Expect = 4.7 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +3 Query: 312 IRMHVHLEMRLSKGILMYNRPETEGPRFAISRRNSGRQLCV 434 I H ++ R S IL + RPE EGP R N G L + Sbjct: 81 IPYHAMIDTRYSLTILTWVRPEMEGPIVQYYRSNWGVHLWI 121 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,857,556 Number of Sequences: 59808 Number of extensions: 445994 Number of successful extensions: 778 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 699 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 776 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1781448916 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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