Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0927
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)         30   1.5  
SB_11531| Best HMM Match : Fapy_DNA_glyco (HMM E-Value=2.7e-05)        29   2.7  
SB_5868| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  

>SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)
          Length = 1038

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 201 NGLRSNAPFNFVLFEHK-MFSENVITNTDNTHRLLCNTNHN 82
           +G++ + P  FV+ +   ++ ENV+TNT   H  L N N N
Sbjct: 742 DGIKGHVPLGFVIVDKSILYKENVLTNTRFWH--LANLNMN 780


>SB_11531| Best HMM Match : Fapy_DNA_glyco (HMM E-Value=2.7e-05)
          Length = 245

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -1

Query: 165 LFEHKMFSENVITNTDNT--HRLLCNTNHNE 79
           +FE++ F ENV+ N D++  ++ LC   HN+
Sbjct: 146 MFEYQAFRENVLNNLDSSVFNKPLCEVLHNQ 176


>SB_5868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 312 IRMHVHLEMRLSKGILMYNRPETEGPRFAISRRNSGRQLCV 434
           I  H  ++ R S  IL + RPE EGP     R N G  L +
Sbjct: 81  IPYHAMIDTRYSLTILTWVRPEMEGPIVQYYRSNWGVHLWI 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,857,556
Number of Sequences: 59808
Number of extensions: 445994
Number of successful extensions: 778
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)