Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0927
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ...    30   1.7  
At3g61730.1 68416.m06921 hypothetical protein                          29   2.9  
At2g29130.1 68415.m03541 laccase, putative / diphenol oxidase, p...    29   3.8  
At5g23150.1 68418.m02707 PWWP domain-containing protein identica...    27   8.8  
At2g17570.1 68415.m02033 undecaprenyl pyrophosphate synthetase f...    27   8.8  

>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
           protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
          Length = 947

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 345 LNAFQGGHAFEFRIMQLKRFNPVFFFI 265
           LN   GG AFE  IM+  R NP+F F+
Sbjct: 342 LNVLDGGCAFEQAIMERGRGNPLFNFL 368


>At3g61730.1 68416.m06921 hypothetical protein
          Length = 354

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 402 RSRNAGLPFPADCTSEFLYLNAFQGGHAFEFR 307
           R     +PFP   T   +Y +AF G H++ FR
Sbjct: 131 RDLQVPVPFPVSSTWIKIYASAFDGSHSYLFR 162


>At2g29130.1 68415.m03541 laccase, putative / diphenol oxidase,
           putative similar to laccase [Liriodendron
           tulipifera][GI:1621467]
          Length = 573

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -1

Query: 438 APRTAAGPNFAERSRNAGLPFPA-DCTSEFLYLNAFQGGHAFEFRIMQLKRFNPVFFFI 265
           A +T AGPN ++     GLP P  +C+++  Y    + G  +  R++     + +FF I
Sbjct: 182 ALQTGAGPNASDAHTFNGLPGPLYNCSTKDTYKLMVKPGKTYLLRLINAALNDELFFTI 240


>At5g23150.1 68418.m02707 PWWP domain-containing protein identical
           to cDNA putative transcription factor (HUA2) GI:4868119;
           contains Pfam profile  PF00855:  PWWP domain
          Length = 1392

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 481 LLSAPHARTDAVLRGNTVYGNLNKSNALSISDFDG 585
           L++A  A+       N+++GNLN S  LSISD  G
Sbjct: 666 LIAAAQAKRKLAHTQNSIFGNLNPS-FLSISDTQG 699


>At2g17570.1 68415.m02033 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to dehydrodolichyl diphosphate
           synthetase (DEDOL-PP synthase) [GI:796076] and S.
           cerevisiae Rer2 [SP|P35196]
          Length = 295

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 393 FAISRRNSGRQLCVGPVPHHSCYQI-GHFRFVKRTARTDRCG 515
           +  SRR+  R + +GP+P H  + + G+ R+ K+    D  G
Sbjct: 23  YGFSRRSLFRVISMGPIPCHIAFIMDGNRRYAKKCGLLDGSG 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,270,484
Number of Sequences: 28952
Number of extensions: 300269
Number of successful extensions: 724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)