Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0926
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    28   1.3  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    27   1.7  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    26   5.3  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    25   7.0  

>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -3

Query: 419 TSTAV*RRYERRQNVSRMKGRGNNH 345
           T TA+ ++Y+  ++VSRM+ +GN +
Sbjct: 104 TKTALTKKYKSNEDVSRMRKKGNKY 128


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 324 RINCNIIVVITPALHPGNVLASFVPSLNCRR 416
           R++C +  +    LH G  L + +P +N RR
Sbjct: 567 RVSCQVQFIDIEGLHDGRSLKTIIPQVNPRR 597


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +2

Query: 335 QYNCGYYPGPSSWKRFGVFRTFSKLP 412
           QYNCG Y G S       FR FSK P
Sbjct: 151 QYNCGNYGGASDLLYH--FRAFSKDP 174


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 287 IRVEKNTCKGIVAY*LQYNCG 349
           IRV   + KG VAY L+ NCG
Sbjct: 397 IRVNSQSGKGGVAYLLKTNCG 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,443
Number of Sequences: 5004
Number of extensions: 26673
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)