BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0925 (626 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 33 0.034 SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.55 SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 29 0.55 SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 29 0.73 SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch... 29 0.73 SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 27 1.7 SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.2 SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 27 2.9 SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 27 2.9 SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 2.9 SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 2.9 SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 3.9 SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 26 3.9 SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 26 5.1 SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|... 25 6.8 SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 25 6.8 SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce... 25 6.8 SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 25 6.8 SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 25 9.0 SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 9.0 SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 25 9.0 SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 9.0 SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 9.0 SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 25 9.0 >SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharomyces pombe|chr 2|||Manual Length = 774 Score = 33.1 bits (72), Expect = 0.034 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Frame = +3 Query: 234 PIVHAAPVEHSSYIHASP---VVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEF 404 P H H ++ P P +H HH P V H+ DH P K+E Sbjct: 363 PWKHEEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEE 422 Query: 405 SYSVEDPHTGDHKSQHETRDGDVVKGEYSLLQPDG 509 S + H+ + + D ++ Q DG Sbjct: 423 HCSCHEDHSVHERPSAKGALEDYIQTFVETFQIDG 457 Score = 29.5 bits (63), Expect = 0.42 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 14/103 (13%) Frame = +3 Query: 306 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE-------FSYSVEDPHTG---DHKS-QH 452 P +H HH P V H+ DH P K+E +S PH G DHK +H Sbjct: 307 PWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPDHKPWKH 366 Query: 453 E--TRDGDVVKG-EYSLLQPDGSIRKVEYTADHHNGFNAIVHN 572 E G ++ +++ +PD K E H + HN Sbjct: 367 EEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHN 409 Score = 28.3 bits (60), Expect = 0.96 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = +3 Query: 306 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 401 P +H HH P V H+ DH P K+E Sbjct: 195 PWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHE 226 Score = 27.9 bits (59), Expect = 1.3 Identities = 11/32 (34%), Positives = 15/32 (46%) Frame = +3 Query: 306 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 401 P +H HH P + H+ DH P K+E Sbjct: 280 PWKHEEHCHHGKFPRPIPHNGTKPDHKPWKHE 311 >SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 534 Score = 29.1 bits (62), Expect = 0.55 Identities = 22/70 (31%), Positives = 31/70 (44%) Frame = +2 Query: 140 AFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPRGTFFVYTCFASSPTLQPCATC 319 + SSS + PS+ S SST S + ST SY S + +SS TL + Sbjct: 177 SLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLS 236 Query: 320 SSRAPRCDSN 349 +S P S+ Sbjct: 237 TSSIPSTSSS 246 >SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosaccharomyces pombe|chr 3|||Manual Length = 877 Score = 29.1 bits (62), Expect = 0.55 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +3 Query: 141 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPV 257 P Q T+ +P SHAAP+ + P H+ P + A PV Sbjct: 63 PRKQTTS--SPSFSHAAPLHPLSPPSFTHSQPQIQAQPV 99 >SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 297 Score = 28.7 bits (61), Expect = 0.73 Identities = 18/60 (30%), Positives = 25/60 (41%) Frame = +2 Query: 170 PSIESCCSSTDSRSPFDSTCRSYCSRRPRGTFFVYTCFASSPTLQPCATCSSRAPRCDSN 349 PS + C S + +S S S CS+ +G S + C C+S P C SN Sbjct: 233 PSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSC--CTSEKPSCCSN 290 >SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 319 Score = 28.7 bits (61), Expect = 0.73 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = -2 Query: 571 LCTIALNPLWWSAVYSTLRMEPSG*SREYSPFTTSPSRVS 452 +C + L LW ++Y+TLR G + E PFT S S VS Sbjct: 15 ICGVILLILWGYSLYNTLRFMVPGKATE--PFTLSLSDVS 52 >SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizosaccharomyces pombe|chr 2|||Manual Length = 426 Score = 27.5 bits (58), Expect = 1.7 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Frame = +3 Query: 141 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEHSSYIHASPVVQHFSPVQHA 320 PS+Q ++ P + P A+P +Q P P S I AS + + + ++++ Sbjct: 206 PSNQKPPNFAPGMPAPGPTAVSASPSLQSMPPTNGVIPGAQPS-IEAS-IEKESTSIRNS 263 Query: 321 PVVHHAAI--PIAVEHSDHVEDHAPAK 395 V + + + V S VE P+K Sbjct: 264 TVTNDRVVNTTVDVSQSQTVETSGPSK 290 >SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces pombe|chr 3|||Manual Length = 2812 Score = 27.1 bits (57), Expect = 2.2 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = -1 Query: 329 HDWSMLHRAEVLDYWRSMYI 270 +D+S + E +DYW+S+YI Sbjct: 549 NDYSPMLSYEAIDYWKSLYI 568 >SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1010 Score = 26.6 bits (56), Expect = 2.9 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = +3 Query: 264 SSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 425 S Y+H VV+ Q P+ H P + SDH + A K F SV++P Sbjct: 414 SRYLHFWLVVEGLKESQDDPLNAHMIAPFSDIVSDHTDFTAIVKSYFE-SVDNP 466 >SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 390 Score = 26.6 bits (56), Expect = 2.9 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +1 Query: 292 SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSR 420 S S C + S + NT +S + LPR++S+ IP++ Sbjct: 181 SGRSIDCQWMDSVALNLSRYYGNTEALSSLPLPRNLSADIPAK 223 >SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pombe|chr 1|||Manual Length = 649 Score = 26.6 bits (56), Expect = 2.9 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +3 Query: 159 AHYTPVLSHAAPVLTHAAPL 218 A +TPVL H + +L H +PL Sbjct: 538 AEHTPVLKHTSSLLDHHSPL 557 >SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces pombe|chr 2|||Manual Length = 637 Score = 26.6 bits (56), Expect = 2.9 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Frame = +1 Query: 349 LPSNTPIMSKIML--PRSMSSHIPSRIPTPAITSPN 450 +PSNT I S L P S++IP+ +PT + S N Sbjct: 455 VPSNTTISSSPPLTSPVKTSANIPNLLPTSELDSSN 490 >SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1628 Score = 26.2 bits (55), Expect = 3.9 Identities = 21/81 (25%), Positives = 34/81 (41%) Frame = -3 Query: 423 DPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG*SVGLLAKHVYTKNVPRGRR 244 D R++ HT RE + + RR+ ESQ+ R ++ + T NV R R Sbjct: 1440 DNLRSVSRHTRREPQQAQNLNARREHESQKSDRWRQNGNVNRNPRVSNNNST-NVSRERS 1498 Query: 243 EQ*DRHVESKGLRESVLEQHD 181 + + + R+ V E D Sbjct: 1499 SEANHRTSNDNKRDEVTEGKD 1519 >SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3|||Manual Length = 378 Score = 26.2 bits (55), Expect = 3.9 Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 4/79 (5%) Frame = +3 Query: 123 IVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAG-PI---VHAAPVEHSSYIHASPV 290 I H +PS + + H P T +AP G P+ H A + A P Sbjct: 270 IYEHSKPSETVKSEQETAVEHPKPTATTSAPSASPTGVPVEEESHKATSDAVPPAEAKPE 329 Query: 291 VQHFSPVQHAPVVHHAAIP 347 S + AP +P Sbjct: 330 PVPASAAERAPTSESTTVP 348 >SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizosaccharomyces pombe|chr 2|||Manual Length = 395 Score = 25.8 bits (54), Expect = 5.1 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +1 Query: 349 LPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPV 462 +P T + + LP S+ + S+ TP+ ++ T PV Sbjct: 185 IPEGTALSQRETLPNMGSAQMKSQSRTPSFSNVTTSPV 222 >SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr 1|||Manual Length = 572 Score = 25.4 bits (53), Expect = 6.8 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -3 Query: 513 WNHQAEVESIRLSRHHHHGFRVG 445 W++ A VE+ H GFRVG Sbjct: 497 WDYAAIVEAFNAGEGHAKGFRVG 519 >SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 365 Score = 25.4 bits (53), Expect = 6.8 Identities = 9/32 (28%), Positives = 18/32 (56%) Frame = +3 Query: 366 DHVEDHAPAKYEFSYSVEDPHTGDHKSQHETR 461 D+V++H P E + ++ DH + ++TR Sbjct: 2 DNVQEHDPDTQEHNNETQNHKQEDHSNSYQTR 33 >SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces pombe|chr 1|||Manual Length = 104 Score = 25.4 bits (53), Expect = 6.8 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +2 Query: 191 SSTDSRSPFDSTCRSYCSR 247 S +DS S DS+C S CSR Sbjct: 80 SDSDSDSDSDSSCSSCCSR 98 >SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 891 Score = 25.4 bits (53), Expect = 6.8 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -3 Query: 129 ERCFGKTQHGRGPRL*H 79 +RCFGKT G P L H Sbjct: 415 KRCFGKTNDGSNPCLYH 431 >SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schizosaccharomyces pombe|chr 2|||Manual Length = 277 Score = 25.0 bits (52), Expect = 9.0 Identities = 7/21 (33%), Positives = 13/21 (61%) Frame = -1 Query: 347 WNRSVVHDWSMLHRAEVLDYW 285 WN + D+ +L+R+ +D W Sbjct: 230 WNHAYYKDYGLLNRSRYIDTW 250 >SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 604 Score = 25.0 bits (52), Expect = 9.0 Identities = 17/47 (36%), Positives = 20/47 (42%) Frame = +2 Query: 116 PKHRSP*RAFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPR 256 P+H + S G+ PS S S SRSP S R SR R Sbjct: 113 PRHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSR 159 >SPAC688.06c |slx4||structure-specific endonuclease subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 419 Score = 25.0 bits (52), Expect = 9.0 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +2 Query: 146 SSSNGTLYPSIESCCSSTDSRS 211 S S TL +ESC + DSRS Sbjct: 304 SDSKATLIKIVESCLDAIDSRS 325 >SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual Length = 175 Score = 25.0 bits (52), Expect = 9.0 Identities = 10/23 (43%), Positives = 11/23 (47%) Frame = -3 Query: 534 LCIRPCGWNHQAEVESIRLSRHH 466 LC C W+ A V SI R H Sbjct: 59 LCCSQCDWHEPANVYSIEQRRSH 81 >SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces pombe|chr 2|||Manual Length = 419 Score = 25.0 bits (52), Expect = 9.0 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = +3 Query: 27 MFFKIAVVCSILAICQGGVIDEGHGHAVSSQSIVRHDEPSHQATAH 164 + F +A++CS+L GGV+ GH ++ VR PS++A + Sbjct: 92 LIFIVALICSVLIGVLGGVL--GH------RTAVRDRHPSYKAKTY 129 >SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901 |Schizosaccharomyces pombe|chr 2|||Manual Length = 537 Score = 25.0 bits (52), Expect = 9.0 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +3 Query: 318 APVVHHAAIPIAVEHSDHVED 380 +P + + IP++ EHSD VE+ Sbjct: 201 SPEIAKSGIPLSSEHSDDVEE 221 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,698,421 Number of Sequences: 5004 Number of extensions: 62208 Number of successful extensions: 259 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 232 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 257 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 277683324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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