Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0925
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 38 0.004
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 37 0.010
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 35 0.041
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 34 0.096
AF106579-5|AAC78198.1| 174|Caenorhabditis elegans Hypothetical ... 31 0.67
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 31 0.89
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 31 0.89
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 30 1.2
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 30 1.2
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 29 2.1
U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related... 29 2.7
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 29 3.6
AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical... 29 3.6
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 4.8
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ... 28 4.8
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 28 4.8
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 4.8
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 4.8
Z70756-8|CAA94795.2| 212|Caenorhabditis elegans Hypothetical pr... 28 6.3
U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical p... 28 6.3
AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical ... 28 6.3
Z81464-7|CAB03857.2| 338|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical p... 27 8.3
Z68118-5|CAA92185.1| 245|Caenorhabditis elegans Hypothetical pr... 27 8.3
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 38.3 bits (85), Expect = 0.004
Identities = 32/121 (26%), Positives = 37/121 (30%)
Frame = +3
Query: 90 EGHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEHSS 269
E HGH S + H H A AH+ H H AP H H H
Sbjct: 443 ESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEH------HHAPA-HHGHHGEHGTHHGHHG 495
Query: 270 YIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQ 449
H+ H HAP H H H E H + + H G H S
Sbjct: 496 SHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSH 555
Query: 450 H 452
H
Sbjct: 556 H 556
Score = 33.5 bits (73), Expect = 0.13
Identities = 40/172 (23%), Positives = 55/172 (31%), Gaps = 14/172 (8%)
Frame = +3
Query: 96 HGHAVSSQSIVRHDEPS--HQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEHSS 269
HGH S S H H A AH+ H H H P H EH +
Sbjct: 491 HGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE---HHHAPAHHGHHGEHGT 547
Query: 270 Y-----IHASPV------VQHFSPVQHAPVVHHAAIPIAV-EHSDHVEDHAPAKYEFSYS 413
+ H SP H +P H HH + + H H H + +
Sbjct: 548 HHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHG 607
Query: 414 VEDPHTGDHKSQHETRDGDVVKGEYSLLQPDGSIRKVEYTADHHNGFNAIVH 569
H G H + + G G + P E+ DHH+G + + H
Sbjct: 608 EHGVHHGHHGAGYGAHHGH--HGAHHHHAPHHEHH--EHHGDHHHGSHGVHH 655
Score = 32.3 bits (70), Expect = 0.29
Identities = 29/119 (24%), Positives = 38/119 (31%)
Frame = +3
Query: 96 HGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEHSSYI 275
HGH H + H+ SH +P H H P H EH ++
Sbjct: 468 HGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPA-HHGHHGEHHHAPAHHGHHGEHGTH- 525
Query: 276 HASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQH 452
H H +P H HH H H H+PA + + E H H H
Sbjct: 526 HGHHGEHHHAPAHHG---HHGEH--GTHHGHHGSHHSPAHH--GHHGEHHHAPAHHGHH 577
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 37.1 bits (82), Expect = 0.010
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 9/147 (6%)
Frame = +3
Query: 132 HDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEHSSYIHASPVVQHFSPV 311
HD + P + + + +H G + + S+ H+S +H
Sbjct: 662 HDHHDRSSPVASEPAARSPSVQSSRTSEHFEHRGEVPQSPS---SNQFHSS---EHIEEA 715
Query: 312 QHAPVVHHAAI--PIAVEHSDHVE--DHAPA--KYEF--SYSVEDPHTGDHKSQH-ETRD 464
+ +PV + ++ P A EH +H E H+PA + EF S SV PH +H H E +
Sbjct: 716 RQSPVTNQESVHSPHASEHFEHREVVPHSPAASQEEFGRSPSVHSPHVSEHFEHHEEAQH 775
Query: 465 GDVVKGEYSLLQPDGSIRKVEYTADHH 545
V E + P +HH
Sbjct: 776 SPVASQEEAARSPSVHSSHASEHFEHH 802
Score = 32.7 bits (71), Expect = 0.22
Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
Frame = +3
Query: 90 EGHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVH--AAPVE- 260
E G S S + H A +PV + + HA+ +H + H AA E
Sbjct: 692 EHRGEVPQSPSSNQFHSSEHIEEARQSPVTNQESVHSPHASEHFEHREVVPHSPAASQEE 751
Query: 261 --HSSYIHASPVVQHF---SPVQHAPVV-HHAAIPIAVEHSDHVEDH 383
S +H+ V +HF QH+PV A HS H +H
Sbjct: 752 FGRSPSVHSPHVSEHFEHHEEAQHSPVASQEEAARSPSVHSSHASEH 798
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 1/117 (0%)
Frame = +3
Query: 108 VSSQSIVRHDEP-SHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEHSSYIHAS 284
V S++ H E S A+ H L + + + P+ + P S + +S
Sbjct: 627 VQSENFEHHAEVHSFHASEHIDEALPSPVQSVHSSHDHHDRSSPVA-SEPAARSPSVQSS 685
Query: 285 PVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHE 455
+HF +H V + S+H+E+ + SV PH +H E
Sbjct: 686 RTSEHF---EHRGEVPQSPSSNQFHSSEHIEEARQSPVTNQESVHSPHASEHFEHRE 739
Score = 29.1 bits (62), Expect = 2.7
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Frame = +3
Query: 126 VRHDEPSHQATAHYTPVLS-HAAPVLTHAAPLIQHAGPIVHAAPV-EH-SSYIHASPVVQ 296
V D +H +PV S H++ H Q P VH++ EH SPV
Sbjct: 556 VHTDHKAHSEDVPQSPVQSVHSSHASEHIDEAPQSPVPSVHSSHASEHIEQEALPSPVAS 615
Query: 297 HFS-PVQHAPVV------HHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPH 428
P +P+V HHA + + S+H+++ P+ + +S D H
Sbjct: 616 ERDVPSAESPLVQSENFEHHAEVH-SFHASEHIDEALPSPVQSVHSSHDHH 665
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 35.1 bits (77), Expect = 0.041
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +3
Query: 105 AVSSQSIVRHDEPSHQATAHYTPVLSHAAPVL---THAAPLIQHAGPIVHAAPVEHSSYI 275
A + Q V P Q PV A P A P++Q A P+ A+P + +
Sbjct: 179 APTQQPPVVQQTPPPQQPVVQAPVAQQAPPSQPQQAQAQPVVQQAPPVQQASPKPVAQPV 238
Query: 276 HASPVVQHFSP--VQHAPVVHHAAIP 347
PVVQ VQ APVV A P
Sbjct: 239 QQQPVVQAPPKPIVQQAPVVQQAPPP 264
Score = 33.9 bits (74), Expect = 0.096
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 114 SQSIVRHDEPSHQATAHYTPVLSHAAPVL-THAAPLIQHAGPIVHAAPVEHSSYIHASPV 290
+Q +V+ P QA+ PV+ P++Q A P+V AP A PV
Sbjct: 216 AQPVVQQAPPVQQASPKPVAQPVQQQPVVQAPPKPIVQQA-PVVQQAPPPKQQQAQAQPV 274
Query: 291 VQHFSPVQHAPVVHHAAIPI 350
Q P APVV A+ P+
Sbjct: 275 QQ---PPNPAPVVQQASAPV 291
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 33.9 bits (74), Expect = 0.096
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 255 VEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPA 392
VE SSYIH+S +QH H P + ++H H P+
Sbjct: 87 VESSSYIHSSQQIQHPPQQHHPPPPSPPPVAETIQHQPHPSQQQPS 132
>AF106579-5|AAC78198.1| 174|Caenorhabditis elegans Hypothetical
protein F54E2.2 protein.
Length = 174
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 337 AWCTTGACCTGLKCWTTGEACIYEEC 260
+WCTT C G KC TG C Y C
Sbjct: 150 SWCTTDQDCKGKKCCPTG--CDYNVC 173
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
protein.
Length = 1492
Score = 30.7 bits (66), Expect = 0.89
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +3
Query: 105 AVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHA--GPIVHAAPVEHSSYIH 278
A +Q + + SH T P S+ AP A + QH+ G + A P S + H
Sbjct: 1212 APGAQFGAKPEASSHAPTPPPQPHPSYQAPAPPPALSVFQHSPQGAPITAPPPASSHHEH 1271
Query: 279 ASPVVQHFSPVQHAPVVHHA 338
+ F+P AP HA
Sbjct: 1272 IAAPQARFTPTPGAPSPWHA 1291
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 30.7 bits (66), Expect = 0.89
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +3
Query: 105 AVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHA--GPIVHAAPVEHSSYIH 278
A +Q + + SH T P S+ AP A + QH+ G + A P S + H
Sbjct: 1232 APGAQFGAKPEASSHAPTPPPQPHPSYQAPAPPPALSVFQHSPQGAPITAPPPASSHHEH 1291
Query: 279 ASPVVQHFSPVQHAPVVHHA 338
+ F+P AP HA
Sbjct: 1292 IAAPQARFTPTPGAPSPWHA 1311
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/79 (30%), Positives = 29/79 (36%)
Frame = +1
Query: 229 PVLLFTPPPWNILRIYMLRQ*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSH 408
P L PP W R+ S TS N TT PS TP+ ++ P S
Sbjct: 610 PTDLPPPPVWPAPNFDRRRKSSETSFTTN-----TTTNTLTPS-TPVTPPVLRPAFSESK 663
Query: 409 IPSRIPTPAITSPNTKPVM 465
P P T N KP +
Sbjct: 664 APQEPSKPVETKENNKPAL 682
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/79 (30%), Positives = 29/79 (36%)
Frame = +1
Query: 229 PVLLFTPPPWNILRIYMLRQ*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSH 408
P L PP W R+ S TS N TT PS TP+ ++ P S
Sbjct: 512 PTDLPPPPVWPAPNFDRRRKSSETSFTTN-----TTTNTLTPS-TPVTPPVLRPAFSESK 565
Query: 409 IPSRIPTPAITSPNTKPVM 465
P P T N KP +
Sbjct: 566 APQEPSKPVETKENNKPAL 584
>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
protein.
Length = 1198
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = -3
Query: 399 HTSREHDLRHDRSVRRQLESQRGARLEHVAQG*SVGLLAKHVYTKNVPRGRREQ*DRHVE 220
H+S+ R D + L +++ L+ +AQG V+ +P G+REQ D+ +
Sbjct: 27 HSSKSFRNRRDNDLLDWLTAEQKVSLKDIAQGTEEFKKKVAVFYNELPSGKREQRDKFYK 86
Query: 219 SKGLR 205
+ L+
Sbjct: 87 THCLQ 91
>U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related
family protein 2 protein.
Length = 933
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 452 VLGLVIAGVGILDGI*ELILRGSMIFDMIGV 360
+LG+V AG+ IL G+ L L G D++GV
Sbjct: 304 ILGVVSAGIAILTGVGFLSLMGMPYNDIVGV 334
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Frame = -3
Query: 477 SRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQ--G 304
S+HHHH + D+ +++ R H RE + D R+ + + R + +
Sbjct: 114 SKHHHHHHKKERKDKEHKKHKKD-REHRDREKERERDERKERERQQKEKEREDAARREIE 172
Query: 303 *SVGLLAKHVYTKNVPRGRREQ*DRHVESKGLRESVLEQHDS 178
+ AK V + R R+E+ R E K +E + E+ S
Sbjct: 173 EKAEMDAKRVAEEEEER-RKEKEKRREEKKKQKELLKEKERS 213
>AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical
protein Y18H1A.9 protein.
Length = 488
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +2
Query: 119 KHRSP*RAFSSSNGTLYPSIESCCSSTDSRSPFD 220
K+RSP + + G P +CC D FD
Sbjct: 247 KNRSPPKCIQQATGLFQPPTTTCCQGVDLNRNFD 280
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +3
Query: 243 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 419
H V +S + S V SP+ P +H+ + I + + H+ H +E V
Sbjct: 322 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTGVG 381
Query: 420 DPHTGDHKSQHET-RDGDVVKGEYSLL 497
+ SQH DG ++G ++ +
Sbjct: 382 SDSQMSNFSQHNIYLDGPDIRGRHAAI 408
>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
protein W03F11.6e protein.
Length = 1039
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +3
Query: 243 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 419
H V +S + S V SP+ P +H+ + I + + H+ H +E V
Sbjct: 320 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEVG 379
Query: 420 DPHTGDHKSQHET-RDGDVVKGEYSLL 497
+ SQH DG ++G ++ +
Sbjct: 380 SDSQMSNFSQHNIYLDGPDIRGRHAAI 406
>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
protein W03F11.6d protein.
Length = 1184
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +3
Query: 243 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 419
H V +S + S V SP+ P +H+ + I + + H+ H +E V
Sbjct: 320 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEVG 379
Query: 420 DPHTGDHKSQHET-RDGDVVKGEYSLL 497
+ SQH DG ++G ++ +
Sbjct: 380 SDSQMSNFSQHNIYLDGPDIRGRHAAI 406
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +3
Query: 243 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 419
H V +S + S V SP+ P +H+ + I + + H+ H +E V
Sbjct: 320 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEVG 379
Query: 420 DPHTGDHKSQHET-RDGDVVKGEYSLL 497
+ SQH DG ++G ++ +
Sbjct: 380 SDSQMSNFSQHNIYLDGPDIRGRHAAI 406
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +3
Query: 243 HAAPVEHSSYIHASPVVQHFSPVQHAPV-VHHAAIPIAVEHSDHVEDHAPAKYEFSYSVE 419
H V +S + S V SP+ P +H+ + I + + H+ H +E V
Sbjct: 320 HDYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEVG 379
Query: 420 DPHTGDHKSQHET-RDGDVVKGEYSLL 497
+ SQH DG ++G ++ +
Sbjct: 380 SDSQMSNFSQHNIYLDGPDIRGRHAAI 406
>Z70756-8|CAA94795.2| 212|Caenorhabditis elegans Hypothetical
protein T06E4.9 protein.
Length = 212
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +3
Query: 171 PVLSHAAPVLTHAAPLIQHAGPIVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPI 350
P + APVL APL+ P V AAP + +PV +PV P +A P+
Sbjct: 101 PFFASPAPVLAAPAPLLAPPAP-VFAAPRPVFAAPALAPVAP-MAPVLRGPAFAYAPSPV 158
>U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical
protein C33G8.2 protein.
Length = 390
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 474 RHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQR 334
RH HHG R G R G RRN S D D+ R+Q+ ++
Sbjct: 85 RHGHHG-RHGM-GRHGGHGRRNKSGSDSDSSDSSEDKKKRKQMRDKK 129
>AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical
protein ZC190.8 protein.
Length = 227
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/68 (22%), Positives = 28/68 (41%)
Frame = -3
Query: 510 NHQAEVESIRLSRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRG 331
+HQ E + S + G P + + T+R+ + RS R+ ++QR
Sbjct: 143 SHQTEFKKSHRSIREKSNRKSTDSSTELGSPTNSQYSTTTRKSSKKSTRSDRKMEKTQRN 202
Query: 330 ARLEHVAQ 307
+ EH +
Sbjct: 203 EKSEHTEE 210
>Z81464-7|CAB03857.2| 338|Caenorhabditis elegans Hypothetical
protein C08E8.2 protein.
Length = 338
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -3
Query: 402 THTSREHDLRHDRSVRRQLESQRGARLEH--VAQG*SVGLLAKHVYTKN 262
TH+S HD RH ++ LE Q R+ H ++ G +V +LAK++Y N
Sbjct: 139 THSSIRHDCRHFFNL--VLEHQGDGRILHLKISTG-TVKVLAKNLYFPN 184
>Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical
protein T06E4.10 protein.
Length = 180
Score = 27.5 bits (58), Expect = 8.3
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +3
Query: 171 PVLSHAAPVLTHAAPLIQHAGPIVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPI 350
PV++ AAP A A P++ AAP ++ I+ PV +P AP AA+P
Sbjct: 100 PVVA-AAPAFAPAYAPAPVASPMIAAAPALAAASINGLPVAA--APA-FAPAFAPAAVPA 155
Query: 351 AV 356
AV
Sbjct: 156 AV 157
>Z68118-5|CAA92185.1| 245|Caenorhabditis elegans Hypothetical
protein R01E6.5 protein.
Length = 245
Score = 27.5 bits (58), Expect = 8.3
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = +3
Query: 246 AAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 425
A+P+ HSS+ +AS + QH H A EHS H AK E YS +D
Sbjct: 2 ASPISHSSHENASGKYGYGDESQHGKNFHQKA-----EHSGH-----EAK-EKGYS-QDG 49
Query: 426 HTGDHKSQHE 455
DH + H+
Sbjct: 50 KAADHDALHK 59
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,410,679
Number of Sequences: 27780
Number of extensions: 376530
Number of successful extensions: 1415
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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