Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0925
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.46 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.8  
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    21   9.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = +3

Query: 93  GHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 254
           GHGH  S      H   SH AT H+     H+ P+   + P     G   H  P
Sbjct: 420 GHGH--SHIHATPHHHHSHAATPHH----QHSTPLAHSSYPAAIQIGHTPHHHP 467


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +3

Query: 369 HVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKGEYSLLQPDGSIRKVEYTADHHN 548
           H+ D  P   E  Y      T  H+   ETR     KG   + +P GS+R    + D+ N
Sbjct: 166 HIRDVGP---EDGYKTYQCRT-KHRLTGETRLS-ATKGRLVITEPVGSVRPKFPSMDNIN 220

Query: 549 GFN 557
           G +
Sbjct: 221 GLS 223


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 136 SWRTMLWEDTAWPWPSS 86
           SW T++W D+   W  S
Sbjct: 93  SWMTLMWTDSHLSWKPS 109


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 366 DHVEDHAPAKYEFSYSVEDP 425
           DH  DHAP + E  + V DP
Sbjct: 340 DH-GDHAPKQTEVRFKVHDP 358


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 366 DHVEDHAPAKYEFSYSVEDP 425
           DH  DHAP + E  + V DP
Sbjct: 340 DH-GDHAPKQTEVRFKVHDP 358


>AF023666-1|AAC14552.1|  363|Apis mellifera
          sn-glycerol-3-phosphate dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 59 NRADYSNFEEHVEM 18
          N A++SNFE+ V M
Sbjct: 26 NAANFSNFEDRVTM 39


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 492 LLQPDGSIRKVEYTADHHNGFNAIVHNCE 578
           L + DG+        D  +GF+  VH+CE
Sbjct: 57  LAEFDGTTVLCRVCGDKASGFHYGVHSCE 85


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 5   RFSKASQHVLQNCCSLLDFGYLP 73
           +FS     VL     +LD G+LP
Sbjct: 344 KFSSVQFLVLDEADRMLDMGFLP 366


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 504 DGSIRKVEYTADHHNGFNAIVHNCE 578
           DG+        D  +GF+  VH+CE
Sbjct: 3   DGTTVLCRVCGDKASGFHYGVHSCE 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,980
Number of Sequences: 438
Number of extensions: 4345
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)