Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0923
         (481 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    36   0.62 
UniRef50_Q30RM7 Cluster: GTP-binding; n=1; Thiomicrospira denitr...    34   1.4  
UniRef50_A7BTM1 Cluster: Putative uncharacterized protein; n=1; ...    33   2.5  
UniRef50_Q0BJZ2 Cluster: Putative uncharacterized protein; n=2; ...    32   7.7  

>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 35.5 bits (78), Expect = 0.62
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +2

Query: 392 LHCLKYLNQXXXXXXTRGGARYPIRPIVSR 481
           L+     NQ       RGGARYPIRPIVSR
Sbjct: 244 LYVRNEFNQAYRYRRPRGGARYPIRPIVSR 273


>UniRef50_Q30RM7 Cluster: GTP-binding; n=1; Thiomicrospira
           denitrificans ATCC 33889|Rep: GTP-binding -
           Thiomicrospira denitrificans (strain ATCC 33889 / DSM
           1351)
          Length = 205

 Score = 34.3 bits (75), Expect = 1.4
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +1

Query: 154 KYYWDRNTTDRIAQKEGKNYSLIYISLVHCTTPVYFVFKMTCDFWLISIN 303
           KY W+RN TD IA ++      I+I LV C  P   + K   DF L   N
Sbjct: 100 KYDWERNLTDYIASRK---QIKIFIHLVDCRHPFLDIDKSVSDFLLECAN 146


>UniRef50_A7BTM1 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. PS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. PS
          Length = 1020

 Score = 33.5 bits (73), Expect = 2.5
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = -2

Query: 189 NSICSISIPVVFLSTLTLNFNFECTLNEHQIKYLKLLISIEIKN 58
           N + ++S P++FL  LT    + C  NE+Q KYLK +  +E+ N
Sbjct: 190 NKLTNLSYPLLFLRNLT-EITWYCN-NENQGKYLKTIKPLEVNN 231


>UniRef50_Q0BJZ2 Cluster: Putative uncharacterized protein; n=2;
           Francisella tularensis subsp. holarctica|Rep: Putative
           uncharacterized protein - Francisella tularensis subsp.
           holarctica (strain OSU18)
          Length = 131

 Score = 31.9 bits (69), Expect = 7.7
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
 Frame = -2

Query: 384 VNYIKLFSKVSIGSKMYFYLSIIIYAMINGN*PEIASHFEYKIYRCGTVY**NVY*RI-I 208
           +NYIKLFS+ +I   +Y  ++++I             +FE  ++        +++  I +
Sbjct: 13  INYIKLFSRTAIVLFIYLIINLVIAFRFT------MENFEASVFLSALYMLDDIFTLIGL 66

Query: 207 FTFLLRNSICSISIPVVFLSTLTLNFNFECTLNEHQIKYL 88
              +LR  IC + + V F+ T  +N  F  +L ++ +  L
Sbjct: 67  VLAILRYRICLLFLVVGFILTALINIYFIFSLPQYYLHSL 106


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 438,423,934
Number of Sequences: 1657284
Number of extensions: 7767937
Number of successful extensions: 16157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16156
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)