BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0923 (481 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 25 5.9 SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 5.9 SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 25 7.8 SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 25 7.8 >SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr 2|||Manual Length = 530 Score = 25.0 bits (52), Expect = 5.9 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Frame = +1 Query: 109 IKSAFKVKVECQCGQKYYWDRNTTDRIAQKEGKNYSLIYISLVH--CTTPV 255 I + ++ G+ YY+ DR + GK+ I I L+ C+T V Sbjct: 201 ISCTYPESIQTDMGRVYYFLETLVDRSSTFSGKSTGRIPIELIRSPCSTSV 251 >SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 644 Score = 25.0 bits (52), Expect = 5.9 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = +1 Query: 232 LVHCTTPVYFVFKMTCDFWLI 294 +V T +Y+VF +T FW+I Sbjct: 305 IVQYTPHMYYVFYITSTFWII 325 >SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit Cct3|Schizosaccharomyces pombe|chr 2|||Manual Length = 528 Score = 24.6 bits (51), Expect = 7.8 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +2 Query: 71 IEIRSFKYFI*CSLRVHSKLKLSVNVDRNTTGIEILQ 181 + IRSFK + +L + ++ L VNVD N +++ Sbjct: 119 VMIRSFKQALEDALSIIDEITLPVNVDDNAEMFRLIR 155 >SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 720 Score = 24.6 bits (51), Expect = 7.8 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = +1 Query: 232 LVHCTTP-VYFVFKMTCDFWL 291 LV+CT YF+F C+F++ Sbjct: 312 LVYCTEEQAYFLFSQLCEFYI 332 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,884,913 Number of Sequences: 5004 Number of extensions: 36380 Number of successful extensions: 73 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 73 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 184020746 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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