Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0922
(611 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative ... 30 1.4
At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative ... 30 1.4
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 29 3.2
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 29 3.2
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 29 3.2
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ... 28 4.2
At3g52680.1 68416.m05803 F-box family protein contains F-box dom... 28 5.6
At3g44670.1 68416.m04804 disease resistance protein RPP1-Ws[A,C]... 28 5.6
At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR... 28 5.6
At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family pr... 28 5.6
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 27 9.8
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 27 9.8
>At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 403
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 458 GLRYGHFHLIGYFLLDGIGDVFLDC 384
G R+GH L+ L DG+ DV+ DC
Sbjct: 140 GSRFGHDSLVDGMLKDGLWDVYNDC 164
>At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 398
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 458 GLRYGHFHLIGYFLLDGIGDVFLDC 384
G R+GH L+ L DG+ DV+ DC
Sbjct: 135 GSRFGHDSLVDGMLKDGLWDVYNDC 159
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 63 PSVCLSPPWQRQPRPTMPP 7
PS C SPP + QP+P PP
Sbjct: 48 PSPCPSPPPKPQPKPVPPP 66
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 397 TSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTQYTYLSP---TPLKRK 549
+SP P R + P R + +P++R+ PLP R S SP +P++R+
Sbjct: 273 SSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSPIRRR 326
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 397 TSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTQYTYLSP---TPLKRK 549
+SP P R + P R + +P++R+ PLP R S SP +P++R+
Sbjct: 280 SSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSPIRRR 333
>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 513
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 108 LCHRCPFCLVSSLRLPSVCLSPP 40
LC RC L SS +PSV + PP
Sbjct: 331 LCVRCALYLCSSSNVPSVTVGPP 353
>At3g52680.1 68416.m05803 F-box family protein contains F-box domain
Pfam:PF00646
Length = 456
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 107 YVIDAPFVLFLLFDCLRC 54
YVI+APF+ +LL + LRC
Sbjct: 238 YVINAPFLKYLLIEELRC 255
>At3g44670.1 68416.m04804 disease resistance protein
RPP1-Ws[A,C]-like (TIR-NBS-LRR class), putative domain
signature TIR-NBS-LRR exists, suggestive of a disease
resistance protein. Closest Col-0 homolog to both RPP1
Ws-A and RPP1 Ws-C
Length = 872
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 362 KEGACSVYSRETRPLYRREESTL*GESARTSA 457
K G C + RETR L R L ES+R S+
Sbjct: 787 KIGECGILQRETRSLRRSSSPDLSPESSRVSS 818
>At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1194
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 362 KEGACSVYSRETRPLYRREESTL*GESARTSA 457
K G C + RETR L R L ES+R S+
Sbjct: 1155 KIGECGILQRETRSLRRSSSPDLSPESSRVSS 1186
>At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family
protein / glycosyltransferase sugar-binding DXD
motif-containing protein low similarity to
alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
[gi:5726306], Gb3 synthase, Rattus norvegicus
[gi:9082162] ; contains Pfam profiles PF04572: Alpha
1,4-glycosyltransferase conserved region, PF04488:
Glycosyltransferase sugar-binding region containing DXD
motif
Length = 435
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 177 ALHSFRDRRSLHRYLRNYVLHKILCHRCPFCLVSSLRL 64
A+H + R ++H+++ H C FC SSL L
Sbjct: 397 AVHLWNRESKKLRIEEGSIIHQLMSHSCIFCNSSSLHL 434
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -2
Query: 70 STAFGVPFSSLAKATTANDATK 5
S AFG + S +K+TTANDA++
Sbjct: 305 SEAFGKFYGSQSKSTTANDASE 326
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -2
Query: 70 STAFGVPFSSLAKATTANDATK 5
S AFG + S +K+TTANDA++
Sbjct: 305 SEAFGKFYGSQSKSTTANDASE 326
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,427,692
Number of Sequences: 28952
Number of extensions: 184670
Number of successful extensions: 587
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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