Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0920
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    29   0.49 
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    27   2.0  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    26   4.6  
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    25   8.0  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   8.0  

>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 533 SHDDFKSLPSHPAFFISYRAARVSMENIQKSLKKMENDIKALEMDLNNSRVQQCPD 700
           SHD F SLP H +   SY    + +E + + + K  + +    M    SR+ + P+
Sbjct: 231 SHDTFLSLPCHISMHTSYMTQGI-LEGLTQKISKHSDVLNRDAMYSKISRISRLPN 285


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
 Frame = +1

Query: 547 QITTLTPCFFYFLQGSKSFDGEHSE-----VPQEDGERHKSPRD-GP--QQFEGPAVPR 699
           Q TTLT  F Y LQ  KSF+  +++     V Q D ++ ++P D  P   + EGP   R
Sbjct: 16  QKTTLTSLFNYLLQNWKSFETCNTKERELMVQQVDSKKPETPTDLEPLANKLEGPLSER 74


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 410 LLHDVIPSP*KLIVNIY*VRISLEKSVPACGIRTP 514
           +L+ V   P K  +N+Y   ISLE + P CG+  P
Sbjct: 266 ILYMVSKEPGKACMNMY--DISLESTYPTCGMDWP 298


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 529 TKPRRLQITTLTPCFFYFLQGSKSF 603
           T P  L+ TT + C+FYFL   + F
Sbjct: 71  TLPSILRSTTGSSCYFYFLNWLRHF 95


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 277 HRPSNRNALLLHGRNRRGTGTYPRGLTRG 363
           HR  N N L + G +  GT T  + L  G
Sbjct: 256 HRARNHNTLYICGTDEYGTATETKALEEG 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,380
Number of Sequences: 5004
Number of extensions: 55600
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)