Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0920
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182...    30   2.1  
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399...    30   2.1  
02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872...    28   8.3  

>03_05_0142 -
           21217375-21217518,21217851-21217899,21218191-21218258,
           21218368-21218413,21218548-21218641,21218775-21218837,
           21219018-21219171,21219414-21219476,21219568-21219681,
           21219779-21219844,21220813-21220870,21221859-21221932,
           21222045-21222110,21223139-21223187,21223483-21223550,
           21223660-21223705,21223908-21224001,21224117-21224179,
           21224290-21224412,21224503-21224536,21224906-21224968,
           21225825-21225911,21226293-21226370
          Length = 587

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 533 SHDDFKSLPSHPAFFISYRAARVSMENIQKSLKKMENDIKALEMDLN 673
           SH     LP  P  F +   A V   + +K LKK E ++ A E +LN
Sbjct: 26  SHPRPTPLPHEPVAFYNDPGASVDPLDSKKGLKKKERELLAKEAELN 72


>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
            41140165-41140211,41140796-41141029,41141305-41141505,
            41141506-41143407,41144140-41145303,41145574-41145879
          Length = 1737

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 609  SIETLAAL*EIKKAGCEGSDLKSSWLRIERCTGV 508
            S+  L AL E++  GCEG +    WLR+ R   V
Sbjct: 1237 SLLNLTALRELRLKGCEGLETLPEWLRLLRTAKV 1270


>02_05_1305 -
           35586499-35586601,35586963-35587034,35587111-35587232,
           35587767-35587826,35587919-35587997,35588219-35588307,
           35588405-35588492,35591761-35591821,35592546-35592890,
           35593094-35594351
          Length = 758

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 492 PPAGFEHRCIAQYEATTTSNHYPHTLL 572
           PPAG E  C A  ++T T  H  H LL
Sbjct: 4   PPAGVEAVCAAVIKSTLTQPHNHHHLL 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,551,410
Number of Sequences: 37544
Number of extensions: 375052
Number of successful extensions: 904
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)