Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0920
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17573| Best HMM Match : SspO (HMM E-Value=0.55)                     29   3.7  
SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074)                  29   3.7  
SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)                     28   6.4  
SB_28723| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_17573| Best HMM Match : SspO (HMM E-Value=0.55)
          Length = 223

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 24/74 (32%), Positives = 35/74 (47%)
 Frame = +3

Query: 42  ECDFCCFSFCLPSASDKKKTILASGECLGELTGLRLSCGTN*RNLTWLPEPIDIYNVNAE 221
           E D C   F   ++SD++K   A+ + LG  TGLR        N T L   I  Y V   
Sbjct: 147 ERDECYTQFVAENSSDQRKLFDAASKLLGGNTGLRF---PEHANKTVLANDIGRYFV--R 201

Query: 222 KVGTLRYEF*SLSI 263
           K+ T+R +  + S+
Sbjct: 202 KINTIRADIDATSL 215


>SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074)
          Length = 643

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +1

Query: 460 LSTYFIRKIGTRLRDSNTGASLNTKPRRLQITTLTPCFFYFLQ--GSKSFDGEHSEVP-- 627
           LST    K    + D +  AS+N++ R  Q  TL     Y+++       D  H+EV   
Sbjct: 360 LSTDVNPKTKRMIIDQSEKASVNSRKRSSQAQTLVEGKLYYMELLFKAGDDDNHAEVSVL 419

Query: 628 QEDGERHKSPRDG 666
           + DG+R +  R+G
Sbjct: 420 RPDGKREEPLREG 432


>SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)
          Length = 1311

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 25/85 (29%), Positives = 38/85 (44%)
 Frame = +3

Query: 66  FCLPSASDKKKTILASGECLGELTGLRLSCGTN*RNLTWLPEPIDIYNVNAEKVGTLRYE 245
           F   ++SD+KK   A+ + LG  TGLR        N T L   I  Y V   K+ T+R +
Sbjct: 405 FVAENSSDQKKLFDAASKLLGGNTGLRF---PEHANKTVLANDIGRYFV--RKINTIRAD 459

Query: 246 F*SLSIVTMAAPSFKPKRITASRQK 320
             + S+ +       P R  +S  +
Sbjct: 460 IDATSLSSQDVELVPPDRPWSSENR 484


>SB_28723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 861

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 25/85 (29%), Positives = 38/85 (44%)
 Frame = +3

Query: 66  FCLPSASDKKKTILASGECLGELTGLRLSCGTN*RNLTWLPEPIDIYNVNAEKVGTLRYE 245
           F   ++SD+KK   A+ + LG  TGLR        N T L   I  Y V   K+ T+R +
Sbjct: 419 FVAENSSDQKKLFDAASKLLGGNTGLRF---PEHANKTVLANDIGRYFV--RKINTIRAD 473

Query: 246 F*SLSIVTMAAPSFKPKRITASRQK 320
             + S+ +       P R  +S  +
Sbjct: 474 IDATSLSSQDVELVPPDRPWSSENR 498


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,406,203
Number of Sequences: 59808
Number of extensions: 431132
Number of successful extensions: 1035
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)