Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0919
         (447 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   0.57 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   1.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   3.0  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    20   9.3  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 0.57
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 87  NVLASKTSEKVLPPEYHL*KVRNNVRYPTGSRAPEV 194
           N + S T++++  P+    KV  +   PT S +PEV
Sbjct: 91  NNVVSSTNQEIRGPKRKTWKVEEDSPSPTSSVSPEV 126


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 229 PRRPLALPGSLATSGARLPVG 167
           P  P   PGSL + G  +P G
Sbjct: 209 PSTPYPPPGSLGSMGVSVPCG 229


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +3

Query: 303 LPTQKIGSSYIRIKLFIICAYL 368
           LPT ++G+SY+ + + +   +L
Sbjct: 209 LPTGRLGASYVFVVIDVFSKFL 230


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 359 RLFTFMVPYIGRLGLC 406
           R+FT  +P++G    C
Sbjct: 82  RVFTVAIPFVGIANSC 97


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,131
Number of Sequences: 336
Number of extensions: 2240
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10090848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)