Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0919
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   2.3  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   7.0  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    24   9.3  

>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -3

Query: 67  ISYRTHKMYFYFSNFTIAYRN 5
           + Y  H ++FYF+ FT+++++
Sbjct: 125 LEYFGHSLFFYFTAFTLSFKD 145


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 326 APDFLCRQAGVASTTFSSPEVVSTMIKYNLDEPEAPSSASGKSSD 192
           A D+L R+ G+  T      V+  + +  L   EAP++ S  +S+
Sbjct: 200 ALDYLHRECGIIHTDLKPENVLICIDQDALQHIEAPATTSSPTSN 244


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 260 STMIKYNLDEPEAPSSASGK 201
           +++++Y +D  EAP SA GK
Sbjct: 325 NSIVRYVIDYYEAPDSADGK 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,218
Number of Sequences: 5004
Number of extensions: 36704
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)