Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0919
(447 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0321 + 33112793-33113026,33113166-33113546 30 0.97
02_02_0104 - 6802017-6802352,6802756-6803650,6803839-6803988,680... 29 1.3
07_03_0156 - 14524757-14526403 29 1.7
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 28 3.0
03_02_0314 + 7398247-7400877 27 5.2
01_01_1014 - 8022787-8023935 27 5.2
10_08_0978 + 21994359-21996961,21997089-21998229 27 9.1
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748... 27 9.1
>03_06_0321 + 33112793-33113026,33113166-33113546
Length = 204
Score = 29.9 bits (64), Expect = 0.97
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 275 LKTSCSRPRLADTKNRELLYPYQIIYN-LRLFTFMVPYIGRLGLCAFDF*IL 427
++T S+P D R +P I++ L L ++++P+IG +G+C D IL
Sbjct: 1 METDRSQPAPIDP--RRARFPCCIVWTPLPLISWLIPFIGHIGICREDGVIL 50
>02_02_0104 -
6802017-6802352,6802756-6803650,6803839-6803988,
6804099-6804349
Length = 543
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 297 PGLPTQKIGSSYIRIKLFIICAYLPSW 377
PGLP +GSS + +F++ Y P W
Sbjct: 18 PGLPVLLLGSSLALLAVFLVYFYAPFW 44
>07_03_0156 - 14524757-14526403
Length = 548
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 314 LCRQAGVASTTFSSPEVVSTMI-KYNLDEPEAPSSASGKSSDFRRPAS 174
LC V+ SP V T ++++D S GK D+RRPA+
Sbjct: 427 LCVDEKVSDILIESPSNVQTRPGRHSVDVVRGDESRRGKERDYRRPAA 474
>10_08_0894 -
21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 320 DFLCRQAGVASTTFSSPEVVSTMIKYNLDEP 228
D + A VA ++ PE++ST+ KY LD+P
Sbjct: 165 DEVLLNADVAKSSRLKPELLSTVFKYCLDKP 195
>03_02_0314 + 7398247-7400877
Length = 876
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 80 AIQRFSVENLGKGTPARVPLVKSTK*RAVSH 172
++ F VE+ G G+PA VP K AV H
Sbjct: 192 SVNWFKVESRGSGSPALVPAAKQAFDAAVVH 222
>01_01_1014 - 8022787-8023935
Length = 382
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 123 PPEYHL*KVRNNVRYPTGSRAPEVARLPGSARGRLGFVQI 242
PP+ H + + P G+ E R G + GRL +VQI
Sbjct: 230 PPDLHYVPLPQDSELPAGTPDLEKRRCVGVSAGRLRYVQI 269
>10_08_0978 + 21994359-21996961,21997089-21998229
Length = 1247
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 148 TFYKWYSGGSTFSEVFDAKTLYSDILF--ISYRTH 50
+FY+W G S+ + + DAK F IS+ TH
Sbjct: 939 SFYQWEQGASSLARIMDAKDFPVGHKFRLISHYTH 973
>07_03_0061 +
12972944-12973054,12974509-12974536,12974701-12974870,
12975878-12976043,12976122-12976425,12977155-12977350,
12977464-12977622,12978311-12978371,12978904-12978967,
12979099-12979346,12980039-12980250,12980344-12980456,
12980547-12980623,12980710-12980873,12981493-12981564,
12981565-12981760,12981813-12981854,12982358-12982440,
12982534-12982671,12982942-12983124,12983216-12983263
Length = 944
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 272 DLKTSCSRPRLADTKNRELLYPYQIIYN 355
D+ C +P A K EL+Y I+YN
Sbjct: 899 DVVVPCGKPVPASIKTSELMYNEYIVYN 926
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,064,126
Number of Sequences: 37544
Number of extensions: 242160
Number of successful extensions: 614
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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