BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0919 (447 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_36294| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-08) 28 3.1 SB_6177| Best HMM Match : PDE6_gamma (HMM E-Value=1.6) 28 3.1 SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12) 28 4.0 SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3 SB_41838| Best HMM Match : Bromo_TP (HMM E-Value=7.9e-19) 27 7.1 SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 27 9.3 >SB_36294| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-08) Length = 353 Score = 28.3 bits (60), Expect = 3.1 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +2 Query: 281 TSCSRPRLADTKNRELLYPYQIIYNLRLFTFMVPYIG 391 TS SRP ADTK R LL I++ + P +G Sbjct: 159 TSFSRPLRADTKKRHLLIVITILWLFSALWGLFPLLG 195 >SB_6177| Best HMM Match : PDE6_gamma (HMM E-Value=1.6) Length = 642 Score = 28.3 bits (60), Expect = 3.1 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -2 Query: 293 ASTTFSSPEVVSTM-IKYNLDEPEAPSSASGKSSDFRRPASGGI 165 A +T P +TM I +L EP APS+ K DF + A G+ Sbjct: 189 ALSTLRPPTQYNTMNILSSLTEPVAPSATHPKDKDFDKNALDGL 232 >SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12) Length = 917 Score = 27.9 bits (59), Expect = 4.0 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 168 PTGSRAPEVARLPGSARGR 224 PTG AP V R+PG +R R Sbjct: 671 PTGDEAPAVIRIPGRSRER 689 >SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1612 Score = 27.5 bits (58), Expect = 5.3 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Frame = +3 Query: 204 PGSARGRLGFVQ--IVFNHCTHDLWT*KRRARDPGLPTQKIGSSYIRIKLFIICAYLPS 374 PGS R Q I HCT + KR R K+ SY+++ + CA P+ Sbjct: 811 PGSGLVRQSMAQSKIDKRHCTSQIRNSKRVCRASYQRIVKLDHSYLKLSKTVCCACTPA 869 >SB_41838| Best HMM Match : Bromo_TP (HMM E-Value=7.9e-19) Length = 363 Score = 27.1 bits (57), Expect = 7.1 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = -2 Query: 314 LCRQAGVASTTFSSPEVVSTMIKYNLDEPEAPSSASGKSSDFRRPASGGI 165 LCR+ G AST+ + E ++ M++ L E + + S RP G + Sbjct: 109 LCREQGFASTSRMAMETMTEMLQSYLSELARSAKTYCELSSRVRPTLGDV 158 >SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) Length = 2086 Score = 26.6 bits (56), Expect = 9.3 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -2 Query: 236 DEPEAPSSASGKSSDFRRPASGGIP 162 ++PE P SA+ KS RPAS P Sbjct: 1710 NKPERPKSAAAKSQANTRPASKSTP 1734 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,912,363 Number of Sequences: 59808 Number of extensions: 272294 Number of successful extensions: 621 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 599 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 621 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 883875528 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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