Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0919
         (447 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36294| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-08)                 28   3.1  
SB_6177| Best HMM Match : PDE6_gamma (HMM E-Value=1.6)                 28   3.1  
SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               28   4.0  
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_41838| Best HMM Match : Bromo_TP (HMM E-Value=7.9e-19)              27   7.1  
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)                     27   9.3  

>SB_36294| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-08)
          Length = 353

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 281 TSCSRPRLADTKNRELLYPYQIIYNLRLFTFMVPYIG 391
           TS SRP  ADTK R LL    I++       + P +G
Sbjct: 159 TSFSRPLRADTKKRHLLIVITILWLFSALWGLFPLLG 195


>SB_6177| Best HMM Match : PDE6_gamma (HMM E-Value=1.6)
          Length = 642

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 293 ASTTFSSPEVVSTM-IKYNLDEPEAPSSASGKSSDFRRPASGGI 165
           A +T   P   +TM I  +L EP APS+   K  DF + A  G+
Sbjct: 189 ALSTLRPPTQYNTMNILSSLTEPVAPSATHPKDKDFDKNALDGL 232


>SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 917

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 168 PTGSRAPEVARLPGSARGR 224
           PTG  AP V R+PG +R R
Sbjct: 671 PTGDEAPAVIRIPGRSRER 689


>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1612

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +3

Query: 204 PGSARGRLGFVQ--IVFNHCTHDLWT*KRRARDPGLPTQKIGSSYIRIKLFIICAYLPS 374
           PGS   R    Q  I   HCT  +   KR  R       K+  SY+++   + CA  P+
Sbjct: 811 PGSGLVRQSMAQSKIDKRHCTSQIRNSKRVCRASYQRIVKLDHSYLKLSKTVCCACTPA 869


>SB_41838| Best HMM Match : Bromo_TP (HMM E-Value=7.9e-19)
          Length = 363

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 314 LCRQAGVASTTFSSPEVVSTMIKYNLDEPEAPSSASGKSSDFRRPASGGI 165
           LCR+ G AST+  + E ++ M++  L E    +    + S   RP  G +
Sbjct: 109 LCREQGFASTSRMAMETMTEMLQSYLSELARSAKTYCELSSRVRPTLGDV 158


>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
          Length = 2086

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 236  DEPEAPSSASGKSSDFRRPASGGIP 162
            ++PE P SA+ KS    RPAS   P
Sbjct: 1710 NKPERPKSAAAKSQANTRPASKSTP 1734


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,912,363
Number of Sequences: 59808
Number of extensions: 272294
Number of successful extensions: 621
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)